Detailed information NTG0246602

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY79_RS05215
• Genome accession: NZ_CP028749
• Coordinates: 1087936..1088928 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A26
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1082936..1093928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY79_RS05185 (AOY79_05480)	ispD	1082997..1083707 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY79_RS05190 (AOY79_05485)	ispF	1083707..1084186 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY79_RS05195 (AOY79_05490)	truD	1084183..1085232 (+)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
AOY79_RS05200 (AOY79_05495)	surE	1085213..1085974 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY79_RS05205 (AOY79_05500)	pcm	1085968..1086594 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AOY79_RS05210 (AOY79_05505)	nlpD	1086779..1087873 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY79_RS05215 (AOY79_05510)	rpoS	1087936..1088928 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY79_RS05220 (AOY79_05515)	-	1089106..1089657 (-)	552	WP_001179442.1	flavodoxin family protein	-
AOY79_RS05225 (AOY79_05520)	-	1089882..1090925 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AOY79_RS05230 (AOY79_05525)	ygbN	1091068..1092432 (-)	1365	WP_000104433.1	GntP family transporter	-
AOY79_RS05235 (AOY79_05530)	ygbM	1092521..1093297 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=246602 AOY79_RS05215 WP_000081550.1 1087936..1088928(+) (rpoS) [Escherichia coli strain A26]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=246602 AOY79_RS05215 WP_000081550.1 1087936..1088928(+) (rpoS) [Escherichia coli strain A26]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715