Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   CMV25_RS05995 Genome accession   NZ_CP023392
Coordinates   1193432..1194490 (+) Length   352 a.a.
NCBI ID   WP_096039873.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain WiKim0068     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188432..1199490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV25_RS05980 (CMV25_05980) rsmD 1191976..1192542 (+) 567 WP_096039871.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CMV25_RS05985 (CMV25_05985) - 1192505..1192966 (+) 462 WP_096039872.1 ASCH domain-containing protein -
  CMV25_RS05990 (CMV25_05990) coaD 1192963..1193445 (+) 483 WP_061773606.1 pantetheine-phosphate adenylyltransferase -
  CMV25_RS05995 (CMV25_05995) sepM 1193432..1194490 (+) 1059 WP_096039873.1 SepM family pheromone-processing serine protease Regulator
  CMV25_RS06000 (CMV25_06000) - 1194933..1195388 (+) 456 WP_096039874.1 GHKL domain-containing protein -
  CMV25_RS06005 (CMV25_06005) - 1195695..1196408 (+) 714 WP_096039875.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38099.02 Da        Isoelectric Point: 9.4237

>NTDB_id=246602 CMV25_RS05995 WP_096039873.1 1193432..1194490(+) (sepM) [Lactococcus raffinolactis strain WiKim0068]
MIKSKKSFIKKRWAIASLVGILVFLGVLLPLPYYVEMPGTTENVGEMIKVNQTPLHQKSEEGALNLTTVSMMRATGASLI
YAALTDFTDVYSKKDMMGNQTDADYNRMNAFYMASAQNAAIYEAFKLAGKPFELDYKGVYVLDVLKKSTFKDVLHIADTV
TGVNGQSFKSSEELMTYIKSQKIGAKISVQYTDEAGKAKSADGKTIKIADGKAGIGITLVDHTEVKSTPSVTIDAGAIGG
PSAGMMFTLEIYSQLTGQDLTKGREIAGTGTIEKDGKIGRIGGIDKKIATASRNGAQIFLAPDDEITPEMKKVEPGVKSN
YQEALAAAKKLNTKMKIVPVKTVQDTIDYLKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=246602 CMV25_RS05995 WP_096039873.1 1193432..1194490(+) (sepM) [Lactococcus raffinolactis strain WiKim0068]
TTGATCAAAAGTAAAAAGTCATTTATAAAAAAACGCTGGGCTATTGCTAGTCTTGTTGGTATTCTAGTTTTTCTTGGTGT
TTTGCTCCCCCTACCCTACTATGTTGAGATGCCTGGCACGACTGAAAATGTTGGTGAGATGATAAAAGTCAATCAGACAC
CATTGCACCAAAAATCAGAAGAAGGGGCTTTGAATTTGACGACTGTTTCGATGATGCGGGCAACGGGTGCGAGCTTGATT
TATGCTGCATTGACGGATTTTACCGATGTTTACAGTAAAAAAGACATGATGGGTAACCAGACGGATGCTGATTACAATCG
GATGAATGCTTTTTACATGGCAAGTGCTCAGAATGCTGCAATCTACGAGGCATTTAAGTTGGCGGGGAAACCCTTTGAGT
TAGATTATAAAGGTGTTTATGTCCTGGATGTGCTGAAGAAATCGACGTTTAAAGATGTTTTGCATATCGCGGATACAGTG
ACAGGTGTCAATGGGCAAAGTTTTAAATCATCTGAGGAGCTGATGACCTACATCAAGTCCCAAAAGATTGGGGCTAAGAT
TTCAGTTCAGTATACAGATGAAGCGGGTAAGGCAAAATCGGCAGACGGCAAAACGATTAAGATCGCAGATGGTAAAGCTG
GAATTGGGATTACCTTGGTGGATCATACGGAGGTTAAGAGTACGCCATCTGTGACAATTGATGCGGGGGCGATTGGTGGC
CCATCTGCAGGGATGATGTTTACGCTTGAAATCTATTCCCAATTGACGGGCCAAGATTTAACGAAAGGTCGGGAGATTGC
GGGTACAGGTACGATTGAAAAAGATGGGAAAATCGGTCGAATTGGCGGTATTGATAAAAAAATCGCCACTGCCAGTCGCA
ATGGTGCTCAAATTTTTCTAGCGCCTGATGATGAGATAACCCCAGAGATGAAGAAAGTCGAGCCTGGTGTTAAGTCAAAC
TATCAAGAAGCATTGGCTGCAGCTAAAAAACTGAATACAAAGATGAAAATTGTCCCAGTGAAAACAGTGCAGGATACAAT
TGACTATTTGAAAGAATAG

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-192)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

50.997

99.716

0.509

Multiple sequence alignment