Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CMV25_RS05080 Genome accession   NZ_CP023392
Coordinates   1023703..1024464 (+) Length   253 a.a.
NCBI ID   WP_096039784.1    Uniprot ID   A0A290PXZ6
Organism   Lactococcus raffinolactis strain WiKim0068     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018703..1029464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV25_RS05055 (CMV25_05055) yajC 1019584..1019940 (-) 357 WP_061774545.1 preprotein translocase subunit YajC -
  CMV25_RS05060 (CMV25_05060) - 1020129..1020875 (+) 747 WP_061774546.1 DUF975 family protein -
  CMV25_RS05065 (CMV25_05065) - 1020916..1021461 (-) 546 WP_096039781.1 DNA-3-methyladenine glycosylase I -
  CMV25_RS05070 (CMV25_05070) - 1021609..1022565 (+) 957 WP_096039782.1 rhodanese-related sulfurtransferase -
  CMV25_RS05075 (CMV25_05075) - 1022605..1023645 (-) 1041 WP_096039783.1 glycerate kinase -
  CMV25_RS05080 (CMV25_05080) spo0J 1023703..1024464 (+) 762 WP_096039784.1 ParB/RepB/Spo0J family partition protein Regulator
  CMV25_RS05085 (CMV25_05085) dnaA 1024825..1026195 (+) 1371 WP_096039785.1 chromosomal replication initiator protein DnaA -
  CMV25_RS05090 (CMV25_05090) dnaN 1026367..1027509 (+) 1143 WP_061774552.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28654.30 Da        Isoelectric Point: 7.2094

>NTDB_id=246600 CMV25_RS05080 WP_096039784.1 1023703..1024464(+) (spo0J) [Lactococcus raffinolactis strain WiKim0068]
METIQLLPISDIVKNPYQPRIVFDDKKLQELSDSIKENGVLQPIIVRKSPIIGYEILAGERRFRASQLAGLTEIPAIIRQ
LTDDEMMTLAILENLQRDDLTLLDEARSLQNLVTKQGLTHTQIAEKLGKSRPYVTNAIRILNLPDPILEMIEVQKISQGH
ARLLLGLKTPQEQLAWAQRIDQEQLSVRALEKRLTKQTNEPNIQSSKDVFIKSAETDIAKALGQAVTIKPNKIEIAYNTL
EDLNRLLLILTQK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=246600 CMV25_RS05080 WP_096039784.1 1023703..1024464(+) (spo0J) [Lactococcus raffinolactis strain WiKim0068]
ATGGAAACTATTCAATTGCTACCAATATCAGATATCGTCAAAAATCCCTATCAACCTCGGATCGTCTTTGACGACAAAAA
GTTACAAGAACTTAGCGATTCAATTAAAGAAAATGGTGTCTTACAACCAATCATCGTCAGAAAATCACCAATTATTGGGT
ACGAAATTTTAGCTGGGGAACGCCGTTTTAGAGCTTCTCAATTAGCTGGCCTCACTGAAATTCCGGCTATTATCCGCCAA
TTAACAGATGACGAGATGATGACACTAGCGATTTTGGAAAATTTACAACGGGATGATTTGACCCTTCTAGATGAAGCGCG
GAGTCTTCAAAATCTCGTGACGAAACAAGGTTTGACCCATACTCAAATCGCTGAAAAACTTGGCAAATCTAGACCTTATG
TGACCAATGCCATTCGAATTTTAAATCTCCCTGACCCAATTTTAGAGATGATTGAGGTGCAAAAGATCTCCCAAGGTCAC
GCGCGACTTTTACTCGGTCTAAAAACACCACAAGAACAATTAGCTTGGGCACAACGGATTGATCAAGAACAACTTTCTGT
TCGCGCACTCGAAAAACGCTTGACCAAACAAACGAACGAGCCTAATATACAATCTTCTAAAGATGTCTTTATCAAATCAG
CTGAAACAGATATTGCGAAAGCTTTGGGTCAAGCAGTAACGATTAAGCCAAACAAAATAGAAATTGCCTACAATACACTA
GAAGATCTTAACAGACTTCTCCTCATTTTGACCCAAAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-94)

HTH domain found in ParB protein (HTH_ParB)

(146-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.004

99.209

0.486

Multiple sequence alignment