Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   TBD_RS01860 Genome accession   NC_007404
Coordinates   404011..405054 (-) Length   347 a.a.
NCBI ID   WP_041432218.1    Uniprot ID   -
Organism   Thiobacillus denitrificans ATCC 25259     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399011..410054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TBD_RS01840 (Tbd_0369) - 399018..399752 (+) 735 WP_202943211.1 hypothetical protein -
  TBD_RS01845 (Tbd_0371) - 400421..400744 (+) 324 WP_041432217.1 hypothetical protein -
  TBD_RS01850 (Tbd_0374) ftsX 402419..403345 (-) 927 WP_011310887.1 permease-like cell division protein FtsX -
  TBD_RS01855 (Tbd_0375) ftsE 403342..404004 (-) 663 WP_011310888.1 cell division ATP-binding protein FtsE -
  TBD_RS01860 (Tbd_0376) pilA 404011..405054 (-) 1044 WP_041432218.1 signal recognition particle-docking protein FtsY Machinery gene
  TBD_RS01865 (Tbd_0377) - 405178..406539 (+) 1362 WP_011310890.1 M16 family metallopeptidase -
  TBD_RS01870 (Tbd_0378) - 406529..407836 (+) 1308 WP_011310891.1 M16 family metallopeptidase -
  TBD_RS01875 (Tbd_0379) rsmD 407826..408398 (+) 573 WP_011310892.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  TBD_RS01880 (Tbd_0380) coaD 408401..408883 (+) 483 WP_011310893.1 pantetheine-phosphate adenylyltransferase -
  TBD_RS01885 (Tbd_0381) - 408901..409152 (+) 252 WP_011310894.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36795.20 Da        Isoelectric Point: 5.5089

>NTDB_id=24660 TBD_RS01860 WP_041432218.1 404011..405054(-) (pilA) [Thiobacillus denitrificans ATCC 25259]
MFSFFKSKPPSTETPADAQNDAADAQATDAAPDAPAAEATPPARVSWAQRLKQGLAKTRDRLGGQLAGLFGVGRKIDAEL
FEELETILITADIGVDATQALLDTLQKKVRRENLTEASELQTALKQALIDMLLPLQAPLDVKTHKPFILMLAGVNGAGKT
TTIGKLAKLYQAQGLSVLLAAGDTFRAAAREQLQVWGERNGVTVVSQEKGDSAAVIFDAIQAARARNIDVVLADTAGRLP
TQLHLMEEIRKVKRVIEKAIPGAPHEILLVLDANTGQNAVAQVKAFDDALGVSGLVLTKLDGTAKGGAIAAVAQARPLPV
RYIGVGETVDDLRPFDARDFVEAVFAA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=24660 TBD_RS01860 WP_041432218.1 404011..405054(-) (pilA) [Thiobacillus denitrificans ATCC 25259]
GTGTTTAGTTTCTTCAAGTCCAAACCGCCCTCCACCGAGACGCCGGCCGACGCACAAAACGATGCGGCCGACGCACAAGC
CACTGACGCTGCGCCGGACGCGCCGGCCGCCGAAGCCACGCCCCCGGCACGTGTGAGTTGGGCGCAACGGCTCAAGCAAG
GTCTCGCCAAGACGCGCGACCGGCTCGGCGGCCAGCTCGCGGGGCTCTTCGGCGTTGGACGCAAGATCGACGCCGAGCTG
TTCGAGGAACTCGAGACCATCCTGATCACGGCCGACATCGGCGTCGACGCGACCCAGGCCCTGCTCGACACGCTGCAGAA
AAAGGTCCGCCGCGAAAATCTCACCGAGGCGTCGGAACTGCAGACCGCGCTGAAGCAGGCGCTGATCGACATGCTGCTTC
CGCTGCAGGCGCCGCTCGACGTCAAAACGCACAAACCTTTCATCCTCATGCTCGCGGGCGTCAACGGCGCCGGCAAGACC
ACGACCATCGGCAAGCTCGCCAAGCTCTACCAGGCGCAAGGCCTCTCGGTTCTGCTCGCCGCCGGCGACACCTTCCGCGC
GGCCGCACGCGAACAACTTCAGGTCTGGGGCGAGCGCAACGGGGTCACCGTCGTCAGCCAGGAAAAAGGCGACTCGGCCG
CGGTGATTTTCGATGCAATCCAGGCGGCCCGCGCGCGCAATATCGACGTCGTCCTCGCCGACACGGCCGGCCGGCTGCCG
ACGCAGTTGCACCTGATGGAAGAGATCCGCAAGGTCAAGCGCGTCATCGAGAAGGCGATCCCGGGCGCCCCGCACGAGAT
CCTGCTCGTGCTCGACGCGAACACCGGACAGAACGCCGTGGCGCAGGTCAAGGCTTTCGACGACGCGCTCGGTGTCAGCG
GACTCGTACTGACCAAGCTCGACGGCACCGCCAAGGGCGGCGCGATCGCCGCAGTCGCGCAGGCGCGTCCGCTGCCGGTC
CGCTACATCGGCGTCGGCGAAACCGTCGACGATCTGCGGCCGTTCGATGCCCGCGACTTCGTCGAGGCCGTGTTCGCGGC
CTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(62-128)

SRP54-type protein, GTPase domain (SRP54)

(147-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

67.752

88.473

0.599

Multiple sequence alignment