Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOY80_RS14310 Genome accession   NZ_CP028748
Coordinates   2934698..2936125 (+) Length   475 a.a.
NCBI ID   WP_000980607.1    Uniprot ID   -
Organism   Escherichia coli strain A27     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2929698..2941125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY80_RS14270 (AOY80_15195) yeeW 2929882..2930076 (+) 195 WP_000988600.1 DUF5983 family protein -
  AOY80_RS14275 (AOY80_15200) - 2930122..2930202 (+) 81 Protein_2777 hypothetical protein -
  AOY80_RS14280 (AOY80_15205) - 2930491..2930637 (-) 147 Protein_2778 transposase domain-containing protein -
  AOY80_RS14285 (AOY80_15210) - 2930691..2930873 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AOY80_RS14290 (AOY80_15215) tmaR 2930974..2931303 (-) 330 WP_000450409.1 DUF496 family protein -
  AOY80_RS14295 (AOY80_15220) yeeA 2931475..2932533 (-) 1059 WP_001200890.1 FUSC family protein -
  AOY80_RS14300 (AOY80_15225) sbmC 2932731..2933204 (-) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  AOY80_RS14305 (AOY80_15230) dacD 2933323..2934489 (-) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AOY80_RS14310 (AOY80_15235) sbcB 2934698..2936125 (+) 1428 WP_000980607.1 exodeoxyribonuclease I Machinery gene
  AOY80_RS14315 (AOY80_15240) tsuB 2936168..2936395 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AOY80_RS14320 (AOY80_15245) tsuA 2936409..2937467 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  AOY80_RS14325 (AOY80_15250) plaP 2937646..2939004 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AOY80_RS14330 (AOY80_15255) yoeI 2938994..2939056 (-) 63 WP_010723108.1 membrane protein YoeI -
  AOY80_RS14335 (AOY80_15260) yeeY 2939271..2940200 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AOY80_RS14340 (AOY80_15265) yeeZ 2940246..2941070 (-) 825 WP_000754749.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54458.73 Da        Isoelectric Point: 5.4700

>NTDB_id=246540 AOY80_RS14310 WP_000980607.1 2934698..2936125(+) (sbcB) [Escherichia coli strain A27]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=246540 AOY80_RS14310 WP_000980607.1 2934698..2936125(+) (sbcB) [Escherichia coli strain A27]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment