Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY80_RS06100 Genome accession   NZ_CP028748
Coordinates   1266230..1266835 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A27     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1261230..1271835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY80_RS23130 - 1261784..1261882 (+) 99 Protein_1171 hypothetical protein -
  AOY80_RS06070 (AOY80_06445) rsmS 1261935..1262096 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY80_RS06075 (AOY80_06450) priC 1262110..1262637 (-) 528 WP_000844876.1 primosomal replication protein N'' -
  AOY80_RS06080 (AOY80_06455) ybaN 1262707..1263084 (+) 378 WP_001188905.1 DUF454 family protein -
  AOY80_RS06085 (AOY80_06465) apt 1263237..1263788 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY80_RS06090 (AOY80_06470) dnaX 1263917..1265848 (+) 1932 WP_000122023.1 DNA polymerase III subunit gamma/tau -
  AOY80_RS06095 (AOY80_06475) ybaB 1265901..1266230 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY80_RS06100 (AOY80_06480) recR 1266230..1266835 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY80_RS06105 (AOY80_06485) htpG 1266945..1268819 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  AOY80_RS06110 (AOY80_06495) adk 1269000..1269644 (+) 645 WP_001220233.1 adenylate kinase -
  AOY80_RS06115 (AOY80_06500) hemH 1269880..1270842 (+) 963 WP_001250105.1 ferrochelatase -
  AOY80_RS06120 (AOY80_06505) aes 1270839..1271798 (-) 960 WP_047402716.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=246520 AOY80_RS06100 WP_001195025.1 1266230..1266835(+) (recR) [Escherichia coli strain A27]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=246520 AOY80_RS06100 WP_001195025.1 1266230..1266835(+) (recR) [Escherichia coli strain A27]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment