Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CNQ47_RS16640 Genome accession   NZ_CP023388
Coordinates   3198874..3199503 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 1105     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3193874..3204503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ47_RS16625 (CNQ47_16620) helD 3194116..3196170 (-) 2055 WP_001538528.1 DNA helicase IV -
  CNQ47_RS16630 (CNQ47_16625) yccF 3196293..3196739 (+) 447 WP_001261236.1 YccF domain-containing protein -
  CNQ47_RS16635 (CNQ47_16630) yccS 3196749..3198911 (+) 2163 WP_122986686.1 YccS family putative transporter -
  CNQ47_RS16640 (CNQ47_16635) sxy/tfoX 3198874..3199503 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CNQ47_RS16645 (CNQ47_16640) sulA 3199722..3200231 (+) 510 WP_001682781.1 SOS-induced cell division inhibitor SulA -
  CNQ47_RS16655 (CNQ47_16650) ompA 3200587..3201627 (+) 1041 WP_001682780.1 porin OmpA -
  CNQ47_RS16660 (CNQ47_16655) matP 3201705..3202157 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  CNQ47_RS16665 (CNQ47_16660) ycbZ 3202343..3204103 (+) 1761 WP_000156498.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=246487 CNQ47_RS16640 WP_000839153.1 3198874..3199503(-) (sxy/tfoX) [Escherichia coli strain 1105]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=246487 CNQ47_RS16640 WP_000839153.1 3198874..3199503(-) (sxy/tfoX) [Escherichia coli strain 1105]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment