Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY81_RS17275 Genome accession   NZ_CP028747
Coordinates   3549133..3549738 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A28     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3544133..3554738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY81_RS17255 (AOY81_18350) aes 3544171..3545129 (+) 959 Protein_3392 acetyl esterase -
  AOY81_RS17260 (AOY81_18355) hemH 3545126..3546088 (-) 963 WP_001250088.1 ferrochelatase -
  AOY81_RS17265 (AOY81_18360) adk 3546324..3546968 (-) 645 WP_001220233.1 adenylate kinase -
  AOY81_RS17270 (AOY81_18370) htpG 3547149..3549023 (-) 1875 WP_240760403.1 molecular chaperone HtpG -
  AOY81_RS17275 (AOY81_18375) recR 3549133..3549738 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY81_RS17280 (AOY81_18380) ybaB 3549738..3550067 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY81_RS17285 (AOY81_18385) dnaX 3550120..3552051 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  AOY81_RS17290 (AOY81_18390) apt 3552180..3552731 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY81_RS17295 (AOY81_18400) ybaN 3552884..3553261 (-) 378 WP_001188905.1 DUF454 family protein -
  AOY81_RS17300 (AOY81_18405) priC 3553331..3553858 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  AOY81_RS17305 (AOY81_18410) rsmS 3553872..3554033 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY81_RS24020 - 3554086..3554184 (-) 99 Protein_3403 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=246472 AOY81_RS17275 WP_001195025.1 3549133..3549738(-) (recR) [Escherichia coli strain A28]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=246472 AOY81_RS17275 WP_001195025.1 3549133..3549738(-) (recR) [Escherichia coli strain A28]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443