Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CNQ48_RS15560 Genome accession   NZ_CP023386
Coordinates   3020858..3021487 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 1190     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3015858..3026487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ48_RS15545 (CNQ48_15545) helD 3016100..3018154 (-) 2055 WP_000420538.1 DNA helicase IV -
  CNQ48_RS15550 (CNQ48_15550) yccF 3018277..3018723 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CNQ48_RS15555 (CNQ48_15555) yccS 3018733..3020895 (+) 2163 WP_000875041.1 YccS family putative transporter -
  CNQ48_RS15560 (CNQ48_15560) sxy/tfoX 3020858..3021487 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CNQ48_RS15565 (CNQ48_15565) sulA 3021706..3022215 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CNQ48_RS15575 (CNQ48_15575) ompA 3022572..3023624 (+) 1053 WP_000750418.1 porin OmpA -
  CNQ48_RS15580 (CNQ48_15580) matP 3023700..3024152 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CNQ48_RS15585 (CNQ48_15585) ycbZ 3024338..3026098 (+) 1761 WP_000156477.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=246464 CNQ48_RS15560 WP_000839153.1 3020858..3021487(-) (sxy/tfoX) [Escherichia coli strain 1190]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=246464 CNQ48_RS15560 WP_000839153.1 3020858..3021487(-) (sxy/tfoX) [Escherichia coli strain 1190]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment