Detailed information NTG0246442

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY81_RS05680
• Genome accession: NZ_CP028747
• Coordinates: 1165662..1166654 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A28
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1160662..1171654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY81_RS05650 (AOY81_06070)	ispD	1160723..1161433 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY81_RS05655 (AOY81_06075)	ispF	1161433..1161912 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY81_RS05660 (AOY81_06080)	truD	1161909..1162958 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
AOY81_RS05665 (AOY81_06085)	surE	1162939..1163700 (+)	762	WP_001447327.1	5'/3'-nucleotidase SurE	-
AOY81_RS05670 (AOY81_06090)	pcm	1163694..1164320 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY81_RS05675 (AOY81_06095)	nlpD	1164505..1165599 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AOY81_RS05680 (AOY81_06100)	rpoS	1165662..1166654 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY81_RS05685 (AOY81_06105)	-	1166775..1167182 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
AOY81_RS05690 (AOY81_06110)	-	1167329..1167922 (+)	594	WP_000767716.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY81_RS05695 (AOY81_06115)	-	1167922..1169349 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY81_RS05700 (AOY81_06120)	-	1169360..1169596 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY81_RS05705 (AOY81_06125)	ygbN	1169635..1170999 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=246442 AOY81_RS05680 WP_000081550.1 1165662..1166654(+) (rpoS) [Escherichia coli strain A28]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=246442 AOY81_RS05680 WP_000081550.1 1165662..1166654(+) (rpoS) [Escherichia coli strain A28]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715