Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AOY82_RS14170 Genome accession   NZ_CP028746
Coordinates   2925847..2926476 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain A29     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2920847..2931476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY82_RS14155 (AOY82_15055) helD 2921089..2923143 (-) 2055 WP_001295354.1 DNA helicase IV -
  AOY82_RS14160 (AOY82_15060) yccF 2923266..2923712 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AOY82_RS14165 (AOY82_15065) yccS 2923722..2925884 (+) 2163 WP_000875061.1 YccS family putative transporter -
  AOY82_RS14170 (AOY82_15070) sxy/tfoX 2925847..2926476 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AOY82_RS14175 (AOY82_15075) sulA 2926695..2927204 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AOY82_RS14180 (AOY82_15085) ompA 2927561..2928613 (+) 1053 WP_001307702.1 porin OmpA -
  AOY82_RS14185 (AOY82_15090) matP 2928688..2929140 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  AOY82_RS14190 (AOY82_15095) ycbZ 2929326..2931086 (+) 1761 WP_000156516.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=246388 AOY82_RS14170 WP_000839153.1 2925847..2926476(-) (sxy/tfoX) [Escherichia coli strain A29]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=246388 AOY82_RS14170 WP_000839153.1 2925847..2926476(-) (sxy/tfoX) [Escherichia coli strain A29]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1