Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY82_RS05600 Genome accession   NZ_CP028746
Coordinates   1147967..1148482 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain A29     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1142967..1153482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY82_RS05550 (AOY82_05920) csrA 1143142..1143327 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AOY82_RS05585 (AOY82_05955) yqaB 1145197..1145763 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY82_RS05590 (AOY82_05960) yqaA 1145760..1146188 (+) 429 WP_001287454.1 YqaA family protein -
  AOY82_RS05595 (AOY82_05965) gshA 1146261..1147817 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AOY82_RS05600 (AOY82_05970) luxS 1147967..1148482 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AOY82_RS05605 (AOY82_05975) emrB 1148546..1150084 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY82_RS05610 (AOY82_05980) emrA 1150101..1151273 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY82_RS05615 (AOY82_05985) emrR 1151400..1151930 (-) 531 WP_021553816.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY82_RS05620 (AOY82_05990) ygaH 1152021..1152356 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  AOY82_RS05625 (AOY82_05995) ygaZ 1152346..1153083 (-) 738 WP_000445661.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=246366 AOY82_RS05600 WP_001130211.1 1147967..1148482(+) (luxS) [Escherichia coli strain A29]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=246366 AOY82_RS05600 WP_001130211.1 1147967..1148482(+) (luxS) [Escherichia coli strain A29]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731