Detailed information NTG0246363

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY82_RS05305
• Genome accession: NZ_CP028746
• Coordinates: 1092914..1093906 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A29
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1087914..1098906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY82_RS05275 (AOY82_05650)	ispD	1087973..1088683 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY82_RS05280 (AOY82_05655)	ispF	1088683..1089163 (+)	481	Protein_1043	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY82_RS05285 (AOY82_05660)	truD	1089160..1090210 (+)	1051	Protein_1044	tRNA pseudouridine(13) synthase TruD	-
AOY82_RS05290 (AOY82_05665)	surE	1090191..1090952 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY82_RS05295 (AOY82_05670)	pcm	1090946..1091572 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY82_RS05300 (AOY82_05675)	nlpD	1091757..1092851 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY82_RS05305 (AOY82_05680)	rpoS	1092914..1093906 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY82_RS05310 (AOY82_05685)	ygbN	1094000..1095366 (-)	1367	Protein_1049	GntP family transporter	-
AOY82_RS05315 (AOY82_05690)	ygbM	1095455..1096231 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
AOY82_RS05320 (AOY82_05695)	ygbL	1096236..1096874 (-)	639	WP_001278994.1	aldolase	-
AOY82_RS05325 (AOY82_05700)	otnK	1096871..1098133 (-)	1263	WP_021553822.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=246363 AOY82_RS05305 WP_000081550.1 1092914..1093906(+) (rpoS) [Escherichia coli strain A29]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=246363 AOY82_RS05305 WP_000081550.1 1092914..1093906(+) (rpoS) [Escherichia coli strain A29]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAA
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715