Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CNQ54_RS15605 Genome accession   NZ_CP023359
Coordinates   3011830..3012459 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 1943     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3006830..3017459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ54_RS15590 (CNQ54_15590) helD 3007072..3009126 (-) 2055 WP_047675448.1 DNA helicase IV -
  CNQ54_RS15595 (CNQ54_15595) yccF 3009249..3009695 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CNQ54_RS15600 (CNQ54_15600) yccS 3009705..3011867 (+) 2163 WP_000875046.1 YccS family putative transporter -
  CNQ54_RS15605 (CNQ54_15605) sxy/tfoX 3011830..3012459 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CNQ54_RS15610 (CNQ54_15610) sulA 3012678..3013187 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CNQ54_RS15620 (CNQ54_15620) ompA 3013544..3014584 (+) 1041 WP_000750416.1 porin OmpA -
  CNQ54_RS15625 (CNQ54_15625) matP 3014660..3015112 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CNQ54_RS15630 (CNQ54_15630) ycbZ 3015298..3017058 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=246330 CNQ54_RS15605 WP_000839153.1 3011830..3012459(-) (sxy/tfoX) [Escherichia coli strain 1943]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=246330 CNQ54_RS15605 WP_000839153.1 3011830..3012459(-) (sxy/tfoX) [Escherichia coli strain 1943]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCGCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment