Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY83_RS17385 Genome accession   NZ_CP028745
Coordinates   3653193..3653798 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A30     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3648193..3658798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY83_RS17365 (AOY83_18410) aes 3648347..3649309 (+) 963 WP_240767376.1 acetyl esterase -
  AOY83_RS17370 (AOY83_18415) hemH 3649290..3650252 (-) 963 WP_240767377.1 ferrochelatase -
  AOY83_RS17375 (AOY83_18420) adk 3650384..3651028 (-) 645 WP_001220233.1 adenylate kinase -
  AOY83_RS17380 (AOY83_18430) htpG 3651209..3653083 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  AOY83_RS17385 (AOY83_18435) recR 3653193..3653798 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY83_RS17390 (AOY83_18440) ybaB 3653798..3654127 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY83_RS17395 (AOY83_18445) dnaX 3654180..3656111 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  AOY83_RS17400 (AOY83_18450) apt 3656240..3656791 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY83_RS17405 (AOY83_18460) ybaN 3656953..3657321 (-) 369 WP_086629477.1 DUF454 family protein -
  AOY83_RS17410 (AOY83_18465) priC 3657391..3657918 (+) 528 WP_137427199.1 primosomal replication protein N'' -
  AOY83_RS17415 (AOY83_18470) rsmS 3657932..3658093 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY83_RS23705 - 3658146..3658244 (-) 99 Protein_3426 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=246317 AOY83_RS17385 WP_001195025.1 3653193..3653798(-) (recR) [Escherichia coli strain A30]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=246317 AOY83_RS17385 WP_001195025.1 3653193..3653798(-) (recR) [Escherichia coli strain A30]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTGGGCCCGAAGTCGGCACAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443