Detailed information NTG0246285

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY83_RS05720
• Genome accession: NZ_CP028745
• Coordinates: 1178582..1179574 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A30
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1173582..1184574

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY83_RS05690 (AOY83_06045)	ispD	1173646..1174356 (+)	711	WP_000246159.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY83_RS05695 (AOY83_06050)	ispF	1174356..1174835 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY83_RS05700 (AOY83_06055)	truD	1174832..1175881 (+)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
AOY83_RS05705 (AOY83_06060)	surE	1175862..1176623 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY83_RS05710 (AOY83_06065)	pcm	1176617..1177243 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY83_RS05715 (AOY83_06070)	nlpD	1177428..1178519 (+)	1092	WP_332291655.1	murein hydrolase activator NlpD	-
AOY83_RS05720 (AOY83_06075)	rpoS	1178582..1179574 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY83_RS05725 (AOY83_06080)	-	1179694..1180101 (-)	408	WP_240767746.1	MarR family transcriptional regulator	-
AOY83_RS05730 (AOY83_06085)	-	1180248..1180841 (+)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY83_RS05735 (AOY83_06090)	-	1180841..1182268 (+)	1428	WP_240767747.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY83_RS05740 (AOY83_06095)	-	1182279..1182515 (+)	237	WP_000562980.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY83_RS05745 (AOY83_06100)	ygbN	1182554..1183918 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=246285 AOY83_RS05720 WP_000081550.1 1178582..1179574(+) (rpoS) [Escherichia coli strain A30]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=246285 AOY83_RS05720 WP_000081550.1 1178582..1179574(+) (rpoS) [Escherichia coli strain A30]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACTTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715