Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CJU63_RS05540 Genome accession   NZ_CP023349
Coordinates   1108518..1109147 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ETEC-2264     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103518..1114147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJU63_RS05515 (CJU63_05515) ycbZ 1103908..1105668 (-) 1761 WP_000156526.1 Lon protease family protein -
  CJU63_RS05520 (CJU63_05520) matP 1105854..1106306 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CJU63_RS05525 (CJU63_05525) ompA 1106381..1107433 (-) 1053 WP_000750419.1 porin OmpA -
  CJU63_RS05535 (CJU63_05535) sulA 1107790..1108299 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CJU63_RS05540 (CJU63_05540) sxy/tfoX 1108518..1109147 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CJU63_RS05545 (CJU63_05545) yccS 1109110..1111272 (-) 2163 WP_134688296.1 YccS family putative transporter -
  CJU63_RS05550 (CJU63_05550) yccF 1111282..1111728 (-) 447 WP_001261231.1 YccF domain-containing protein -
  CJU63_RS05555 (CJU63_05555) helD 1111851..1113905 (+) 2055 WP_000420533.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=246251 CJU63_RS05540 WP_000839153.1 1108518..1109147(+) (sxy/tfoX) [Escherichia coli strain ETEC-2264]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=246251 CJU63_RS05540 WP_000839153.1 1108518..1109147(+) (sxy/tfoX) [Escherichia coli strain ETEC-2264]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment