Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY84_RS17810 Genome accession   NZ_CP028744
Coordinates   3694394..3694909 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain A31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3689394..3699909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY84_RS17790 (AOY84_18905) emrA 3689544..3690716 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY84_RS17795 (AOY84_18910) emrB 3690733..3692271 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY84_RS17800 (AOY84_18915) - 3692529..3693236 (+) 708 WP_001097116.1 RNA ligase family protein -
  AOY84_RS17805 (AOY84_18920) - 3693233..3694345 (+) 1113 WP_000638145.1 ATP-binding protein -
  AOY84_RS17810 (AOY84_18925) luxS 3694394..3694909 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AOY84_RS17815 (AOY84_18930) gshA 3695059..3696615 (-) 1557 WP_240754903.1 glutamate--cysteine ligase -
  AOY84_RS17820 (AOY84_18935) yqaA 3696688..3697116 (-) 429 WP_001287457.1 YqaA family protein -
  AOY84_RS17825 (AOY84_18940) yqaB 3697113..3697679 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY84_RS17855 (AOY84_18970) csrA 3699137..3699322 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=246239 AOY84_RS17810 WP_001130211.1 3694394..3694909(-) (luxS) [Escherichia coli strain A31]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=246239 AOY84_RS17810 WP_001130211.1 3694394..3694909(-) (luxS) [Escherichia coli strain A31]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731