Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOY84_RS14535 Genome accession   NZ_CP028744
Coordinates   2983242..2984669 (+) Length   475 a.a.
NCBI ID   WP_072162297.1    Uniprot ID   -
Organism   Escherichia coli strain A31     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2978242..2989669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY84_RS14505 (AOY84_15425) cobU 2978514..2979059 (-) 546 WP_000973161.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  AOY84_RS14510 (AOY84_15430) - 2979226..2979417 (+) 192 Protein_2835 EutP/PduV family microcompartment system protein -
  AOY84_RS14515 (AOY84_15435) tmaR 2979518..2979847 (-) 330 WP_000450409.1 DUF496 family protein -
  AOY84_RS14520 (AOY84_15440) yeeA 2980019..2981077 (-) 1059 WP_001200891.1 FUSC family protein -
  AOY84_RS14525 (AOY84_15445) sbmC 2981275..2981748 (-) 474 WP_032214960.1 DNA gyrase inhibitor SbmC -
  AOY84_RS14530 (AOY84_15450) dacD 2981867..2983033 (-) 1167 WP_000830171.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AOY84_RS14535 (AOY84_15455) sbcB 2983242..2984669 (+) 1428 WP_072162297.1 exodeoxyribonuclease I Machinery gene
  AOY84_RS14540 (AOY84_15460) tsuB 2984712..2984939 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AOY84_RS14545 (AOY84_15465) tsuA 2984953..2986011 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  AOY84_RS14550 (AOY84_15470) plaP 2986190..2987548 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AOY84_RS14555 (AOY84_15475) yoeI 2987538..2987600 (-) 63 WP_010723108.1 membrane protein YoeI -
  AOY84_RS14560 (AOY84_15480) yeeY 2987815..2988744 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AOY84_RS14565 (AOY84_15485) yeeZ 2988790..2989614 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54471.78 Da        Isoelectric Point: 5.6070

>NTDB_id=246229 AOY84_RS14535 WP_072162297.1 2983242..2984669(+) (sbcB) [Escherichia coli strain A31]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=246229 AOY84_RS14535 WP_072162297.1 2983242..2984669(+) (sbcB) [Escherichia coli strain A31]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTAGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment