Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CNQ75_RS12950 Genome accession   NZ_CP023345
Coordinates   2552854..2553459 (-) Length   201 a.a.
NCBI ID   WP_053530142.1    Uniprot ID   -
Organism   Salmonella enterica subsp. diarizonae strain HZS154     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547854..2558459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ75_RS12935 (CNQ75_12860) helD 2548071..2550125 (-) 2055 WP_063390310.1 DNA helicase IV -
  CNQ75_RS12940 (CNQ75_12865) - 2550249..2550695 (+) 447 WP_001261216.1 YccF domain-containing protein -
  CNQ75_RS12945 (CNQ75_12870) yccS 2550714..2552867 (+) 2154 WP_063390309.1 YccS family putative transporter -
  CNQ75_RS12950 (CNQ75_12875) sxy/tfoX 2552854..2553459 (-) 606 WP_053530142.1 TfoX/Sxy family DNA transformation protein Regulator
  CNQ75_RS12955 (CNQ75_12880) sulA 2553676..2554185 (+) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  CNQ75_RS12960 (CNQ75_12885) ompA 2554542..2555594 (+) 1053 WP_063390952.1 porin OmpA -
  CNQ75_RS12965 (CNQ75_12890) matP 2555666..2556118 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CNQ75_RS12970 (CNQ75_12895) - 2556304..2558064 (+) 1761 WP_100212452.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23129.84 Da        Isoelectric Point: 9.0103

>NTDB_id=246215 CNQ75_RS12950 WP_053530142.1 2552854..2553459(-) (sxy/tfoX) [Salmonella enterica subsp. diarizonae strain HZS154]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIAGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=246215 CNQ75_RS12950 WP_053530142.1 2552854..2553459(-) (sxy/tfoX) [Salmonella enterica subsp. diarizonae strain HZS154]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGGCGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGCTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761

Multiple sequence alignment