Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY85_RS06685 Genome accession   NZ_CP028743
Coordinates   1381805..1382410 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A32     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1376805..1387410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY85_RS22785 - 1377359..1377457 (+) 99 Protein_1287 hypothetical protein -
  AOY85_RS06655 (AOY85_07025) rsmS 1377510..1377671 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY85_RS06660 (AOY85_07030) priC 1377685..1378212 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  AOY85_RS06665 (AOY85_07035) ybaN 1378282..1378659 (+) 378 WP_001188900.1 DUF454 family protein -
  AOY85_RS06670 (AOY85_07045) apt 1378812..1379363 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY85_RS06675 (AOY85_07050) dnaX 1379492..1381423 (+) 1932 WP_001682655.1 DNA polymerase III subunit gamma/tau -
  AOY85_RS06680 (AOY85_07055) ybaB 1381476..1381805 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY85_RS06685 (AOY85_07060) recR 1381805..1382410 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY85_RS06690 (AOY85_07065) htpG 1382520..1384394 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  AOY85_RS06695 (AOY85_07075) adk 1384575..1385219 (+) 645 WP_001220233.1 adenylate kinase -
  AOY85_RS06700 (AOY85_07080) hemH 1385351..1386313 (+) 963 WP_001250114.1 ferrochelatase -
  AOY85_RS06705 (AOY85_07085) aes 1386288..1387256 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=246129 AOY85_RS06685 WP_001195025.1 1381805..1382410(+) (recR) [Escherichia coli strain A32]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=246129 AOY85_RS06685 WP_001195025.1 1381805..1382410(+) (recR) [Escherichia coli strain A32]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443