Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CLI97_RS17910 Genome accession   NZ_CP023320
Coordinates   3386824..3387108 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3381824..3392108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI97_RS17885 (CLI97_03530) - 3383069..3383977 (+) 909 WP_094246977.1 ketopantoate reductase family protein -
  CLI97_RS17890 (CLI97_03531) - 3384008..3385240 (-) 1233 WP_070081754.1 aminopeptidase -
  CLI97_RS17895 (CLI97_03532) - 3385341..3385475 (-) 135 WP_003154559.1 protein YkpC -
  CLI97_RS17900 (CLI97_03533) mreBH 3385547..3386554 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  CLI97_RS17910 (CLI97_03534) abrB 3386824..3387108 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CLI97_RS17915 (CLI97_03535) - 3387281..3388585 (+) 1305 WP_014304932.1 ATP-binding protein -
  CLI97_RS17920 (CLI97_03536) - 3388587..3389414 (+) 828 WP_077722153.1 gamma-glutamylcyclotransferase -
  CLI97_RS17925 (CLI97_03537) ktrC 3389455..3390120 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  CLI97_RS17930 (CLI97_03538) ade 3390269..3392002 (+) 1734 WP_094246976.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=246074 CLI97_RS17910 WP_024085249.1 3386824..3387108(+) (abrB) [Bacillus velezensis strain SCGB]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=246074 CLI97_RS17910 WP_024085249.1 3386824..3387108(+) (abrB) [Bacillus velezensis strain SCGB]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment