Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CLI97_RS17795 Genome accession   NZ_CP023320
Coordinates   3366326..3366922 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3361326..3371922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI97_RS17765 (CLI97_03506) - 3361542..3361997 (+) 456 WP_094246983.1 flavodoxin -
  CLI97_RS17770 (CLI97_03507) dapD 3362079..3362789 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CLI97_RS17775 (CLI97_03508) - 3362860..3363984 (+) 1125 WP_094246982.1 N-acetyldiaminopimelate deacetylase -
  CLI97_RS17780 (CLI97_03509) - 3364045..3364290 (+) 246 WP_003154596.1 YkuS family protein -
  CLI97_RS17785 (CLI97_03510) - 3364324..3365130 (-) 807 WP_060386912.1 mechanosensitive ion channel family protein -
  CLI97_RS17790 (CLI97_03511) - 3365417..3365875 (+) 459 WP_094246981.1 redoxin domain-containing protein -
  CLI97_RS17795 (CLI97_03512) rok 3366326..3366922 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  CLI97_RS17800 (CLI97_03513) - 3366943..3367935 (-) 993 WP_014304925.1 hypothetical protein -
  CLI97_RS17805 (CLI97_03514) - 3368081..3368683 (+) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  CLI97_RS17810 (CLI97_03515) - 3368735..3369754 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  CLI97_RS17815 (CLI97_03516) glp 3369772..3371064 (+) 1293 WP_094246980.1 gephyrin-like molybdotransferase Glp -
  CLI97_RS17820 (CLI97_03517) mobB 3371025..3371546 (+) 522 WP_063174790.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=246073 CLI97_RS17795 WP_003154591.1 3366326..3366922(+) (rok) [Bacillus velezensis strain SCGB]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=246073 CLI97_RS17795 WP_003154591.1 3366326..3366922(+) (rok) [Bacillus velezensis strain SCGB]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment