Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   CLI97_RS16245 Genome accession   NZ_CP023320
Coordinates   3084756..3085709 (+) Length   317 a.a.
NCBI ID   WP_070081621.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3079756..3090709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI97_RS16215 (CLI97_03199) argF 3081574..3082545 (+) 972 WP_094247080.1 ornithine carbamoyltransferase -
  CLI97_RS16220 (CLI97_03200) - 3082621..3082800 (+) 180 WP_003155070.1 YjzC family protein -
  CLI97_RS16225 (CLI97_03201) - 3082837..3083022 (-) 186 WP_032874447.1 YjzD family protein -
  CLI97_RS16235 (CLI97_03202) - 3083283..3084017 (+) 735 WP_070081619.1 hypothetical protein -
  CLI97_RS16240 (CLI97_03203) - 3084100..3084666 (+) 567 WP_094247079.1 hypothetical protein -
  CLI97_RS16245 (CLI97_03204) med 3084756..3085709 (+) 954 WP_070081621.1 BMP family ABC transporter substrate-binding protein Regulator
  CLI97_RS16250 (CLI97_03205) comZ 3085722..3085913 (+) 192 WP_003155061.1 ComZ family protein Regulator
  CLI97_RS16255 (CLI97_03206) - 3085943..3086161 (-) 219 WP_003155059.1 hypothetical protein -
  CLI97_RS16260 (CLI97_03207) - 3086329..3087267 (+) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  CLI97_RS16265 (CLI97_03208) fabF 3087290..3088528 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  CLI97_RS16270 (CLI97_03209) - 3088612..3089397 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  CLI97_RS16275 (CLI97_03210) - 3089571..3090557 (+) 987 WP_031378493.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35315.92 Da        Isoelectric Point: 4.5594

>NTDB_id=246064 CLI97_RS16245 WP_070081621.1 3084756..3085709(+) (med) [Bacillus velezensis strain SCGB]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=246064 CLI97_RS16245 WP_070081621.1 3084756..3085709(+) (med) [Bacillus velezensis strain SCGB]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGTACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGCTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTAGGTGTCATCGCCTCCTTTCTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAACCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785

Multiple sequence alignment