Detailed information NTG0246040

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CLI97_RS08880
• Genome accession: NZ_CP023320
• Coordinates: 1659586..1660731 (+)
• Length: 381 a.a.
• NCBI ID: WP_094247421.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SCGB
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1654586..1665731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLI97_RS08860 (CLI97_01751)	-	1655060..1655776 (-)	717	WP_025853599.1	Crp/Fnr family transcriptional regulator	-
CLI97_RS08865 (CLI97_01752)	narK	1655874..1657064 (-)	1191	WP_025853600.1	nitrate transporter NarK	-
CLI97_RS08870 (CLI97_01753)	argS	1657199..1658869 (-)	1671	WP_094247422.1	arginine--tRNA ligase	-
CLI97_RS08875 (CLI97_01754)	-	1658866..1659294 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
CLI97_RS08880 (CLI97_01755)	rapF	1659586..1660731 (+)	1146	WP_094247421.1	Rap family tetratricopeptide repeat protein	Regulator
CLI97_RS20795 (CLI97_01756)	-	1660715..1660834 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
CLI97_RS08885 (CLI97_01757)	speB	1660957..1661394 (-)	438	Protein_1747	agmatinase	-
CLI97_RS08890 (CLI97_01758)	-	1661556..1662983 (-)	1428	WP_071543386.1	DUF885 family protein	-
CLI97_RS08895 (CLI97_01759)	-	1662984..1664324 (-)	1341	WP_094247420.1	MATE family efflux transporter	-
CLI97_RS08900 (CLI97_01760)	-	1664321..1665376 (-)	1056	WP_071543387.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0722

>NTDB_id=246040 CLI97_RS08880 WP_094247421.1 1659586..1660731(+) (rapF) [Bacillus velezensis strain SCGB]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSELLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=246040 CLI97_RS08880 WP_094247421.1 1659586..1660731(+) (rapF) [Bacillus velezensis strain SCGB]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGAGCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.816	100	0.698
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535