Detailed information NTG0245992

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY87_RS19035
• Genome accession: NZ_CP028741
• Coordinates: 3851679..3852671 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A34
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3846679..3857671

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY87_RS19015 (AOY87_20005)	otnK	3847454..3848716 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
AOY87_RS19020 (AOY87_20010)	ygbL	3848713..3849351 (+)	639	WP_001278994.1	aldolase	-
AOY87_RS19025 (AOY87_20015)	ygbM	3849356..3850132 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
AOY87_RS19030 (AOY87_20020)	ygbN	3850221..3851585 (+)	1365	WP_000104457.1	GntP family transporter	-
AOY87_RS19035 (AOY87_20025)	rpoS	3851679..3852671 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY87_RS19040 (AOY87_20030)	nlpD	3852734..3853828 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY87_RS19045 (AOY87_20035)	pcm	3854013..3854639 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY87_RS19050 (AOY87_20040)	surE	3854633..3855394 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY87_RS19055 (AOY87_20045)	truD	3855375..3856424 (-)	1050	WP_000568962.1	tRNA pseudouridine(13) synthase TruD	-
AOY87_RS19060 (AOY87_20050)	ispF	3856421..3856900 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY87_RS19065 (AOY87_20055)	ispD	3856900..3857610 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=245992 AOY87_RS19035 WP_000081550.1 3851679..3852671(-) (rpoS) [Escherichia coli strain A34]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=245992 AOY87_RS19035 WP_000081550.1 3851679..3852671(-) (rpoS) [Escherichia coli strain A34]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATTCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715