Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CEQ83_RS15955 Genome accession   NZ_CP023317
Coordinates   3145554..3145976 (+) Length   140 a.a.
NCBI ID   WP_098112357.1    Uniprot ID   -
Organism   Priestia megaterium strain A     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3140554..3150976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ83_RS15930 (CEQ83_16040) - 3140906..3141739 (-) 834 WP_098112353.1 AraC family transcriptional regulator -
  CEQ83_RS15935 (CEQ83_16045) - 3141942..3142763 (+) 822 WP_098112354.1 sensor histidine kinase -
  CEQ83_RS15940 (CEQ83_16050) - 3142764..3143405 (+) 642 WP_033580507.1 response regulator transcription factor -
  CEQ83_RS15945 (CEQ83_16055) - 3143540..3144919 (+) 1380 WP_155017387.1 PepSY domain-containing protein -
  CEQ83_RS15950 (CEQ83_16060) - 3144949..3145413 (+) 465 WP_098112356.1 FixH family protein -
  CEQ83_RS15955 (CEQ83_16065) nucA/comI 3145554..3145976 (+) 423 WP_098112357.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CEQ83_RS15960 (CEQ83_16070) - 3146131..3146484 (+) 354 WP_223272376.1 DUF1516 family protein -
  CEQ83_RS15965 (CEQ83_16075) - 3146525..3147118 (-) 594 WP_028414498.1 hypothetical protein -
  CEQ83_RS15970 (CEQ83_16080) - 3147271..3147927 (-) 657 WP_028414499.1 TetR/AcrR family transcriptional regulator -
  CEQ83_RS15975 (CEQ83_16085) - 3147950..3149227 (-) 1278 WP_098112358.1 glycosyltransferase -
  CEQ83_RS15980 (CEQ83_16090) - 3149560..3150045 (-) 486 WP_155017388.1 hypothetical protein -
  CEQ83_RS15985 (CEQ83_16095) fsa 3150124..3150792 (-) 669 WP_014459236.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=245974 CEQ83_RS15955 WP_098112357.1 3145554..3145976(+) (nucA/comI) [Priestia megaterium strain A]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=245974 CEQ83_RS15955 WP_098112357.1 3145554..3145976(+) (nucA/comI) [Priestia megaterium strain A]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTAATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTCATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507

Multiple sequence alignment