Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY87_RS05615 Genome accession   NZ_CP028741
Coordinates   1197399..1198004 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A34     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192399..1203004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY87_RS05585 (AOY87_05910) rsmS 1193122..1193283 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY87_RS05590 (AOY87_05915) priC 1193297..1193824 (-) 528 WP_240765851.1 primosomal replication protein N'' -
  AOY87_RS05595 (AOY87_05920) ybaN 1193894..1194271 (+) 378 WP_001188905.1 DUF454 family protein -
  AOY87_RS05600 (AOY87_05930) apt 1194424..1194975 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY87_RS05605 (AOY87_05935) dnaX 1195104..1197017 (+) 1914 WP_240765852.1 DNA polymerase III subunit gamma/tau -
  AOY87_RS05610 (AOY87_05940) ybaB 1197070..1197399 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY87_RS05615 (AOY87_05945) recR 1197399..1198004 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY87_RS05620 (AOY87_05950) htpG 1198114..1199988 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  AOY87_RS05625 (AOY87_05960) adk 1200168..1200812 (+) 645 WP_001220233.1 adenylate kinase -
  AOY87_RS05630 (AOY87_05965) hemH 1201048..1202010 (+) 963 WP_001250105.1 ferrochelatase -
  AOY87_RS05635 (AOY87_05970) aes 1202007..1202966 (-) 960 WP_047402716.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=245960 AOY87_RS05615 WP_001195025.1 1197399..1198004(+) (recR) [Escherichia coli strain A34]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=245960 AOY87_RS05615 WP_001195025.1 1197399..1198004(+) (recR) [Escherichia coli strain A34]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGCCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATAGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTTGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCGCATTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443