Detailed information NTG0245915

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY88_RS17880
• Genome accession: NZ_CP028740
• Coordinates: 3666140..3667132 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A35
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3661140..3672132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY88_RS17855 (AOY88_18975)	ygbN	3661791..3663155 (+)	1365	WP_000104439.1	GntP family transporter	-
AOY88_RS17860 (AOY88_18980)	-	3663194..3663430 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY88_RS17865 (AOY88_18985)	-	3663441..3664872 (-)	1432	Protein_3482	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY88_RS17870 (AOY88_18990)	-	3664872..3665465 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY88_RS17875 (AOY88_18995)	-	3665612..3666019 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
AOY88_RS17880 (AOY88_19000)	rpoS	3666140..3667132 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY88_RS17885 (AOY88_19005)	nlpD	3667195..3668289 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AOY88_RS17890 (AOY88_19010)	pcm	3668474..3669100 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY88_RS17895 (AOY88_19015)	surE	3669094..3669855 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY88_RS17900 (AOY88_19020)	truD	3669836..3670885 (-)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
AOY88_RS17905 (AOY88_19025)	ispF	3670882..3671361 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY88_RS17910 (AOY88_19030)	ispD	3671361..3672071 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=245915 AOY88_RS17880 WP_000081550.1 3666140..3667132(-) (rpoS) [Escherichia coli strain A35]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=245915 AOY88_RS17880 WP_000081550.1 3666140..3667132(-) (rpoS) [Escherichia coli strain A35]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715