Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CA606_RS10795 Genome accession   NZ_CP023315
Coordinates   2272313..2273695 (+) Length   460 a.a.
NCBI ID   WP_096051138.1    Uniprot ID   A0A290MS02
Organism   Caulobacter vibrioides strain CB13b1a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2267313..2278695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA606_RS10770 (CA606_04580) - 2267640..2269163 (+) 1524 WP_096051143.1 replicative DNA helicase -
  CA606_RS10775 (CA606_04575) - 2269178..2269777 (-) 600 WP_096051142.1 TetR/AcrR family transcriptional regulator -
  CA606_RS10780 (CA606_04570) - 2269875..2270360 (+) 486 WP_096051141.1 PaaI family thioesterase -
  CA606_RS10785 (CA606_04565) - 2270419..2271105 (+) 687 WP_096051140.1 MarC family protein -
  CA606_RS10790 (CA606_04560) alr 2271145..2272239 (+) 1095 WP_096051139.1 alanine racemase -
  CA606_RS10795 (CA606_04555) radA 2272313..2273695 (+) 1383 WP_096051138.1 DNA repair protein RadA Machinery gene
  CA606_RS10800 (CA606_04550) - 2273692..2274309 (+) 618 WP_096051137.1 CvpA family protein -
  CA606_RS10805 (CA606_04545) purF 2274306..2275808 (+) 1503 WP_096051136.1 amidophosphoribosyltransferase -
  CA606_RS10810 (CA606_04540) - 2275853..2276839 (+) 987 WP_096051135.1 bile acid:sodium symporter family protein -
  CA606_RS10815 (CA606_04535) - 2276888..2277643 (+) 756 WP_096051134.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47756.69 Da        Isoelectric Point: 5.5968

>NTDB_id=245909 CA606_RS10795 WP_096051138.1 2272313..2273695(+) (radA) [Caulobacter vibrioides strain CB13b1a]
MARDGAVYACQSCGAVQTKWSGQCPACQSWNTLVEEVGARPPGALSTTKATRVRGLQFTGLESETAPPPRILTGVDEFDR
VCGGGVVPGSALLIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEEAVEQIRGRADRMGLAKSNVSLAAETALRDILDG
LKRDNFDLVVIDSIQTMWSDAHEAGPGTVTQVRACATELVRLAKKKGVAILLVGHVTKDGQIAGPRVVEHLVDAVLSFEG
ERGYPFRILRGAKNRFGATDEIGVFEMGDVGLREVKNPSALFLNEGGERAAGAAVFAGIEGSRPVLVEFQALVAPSAYGT
PRRAVVGWDSGRLAMVLAVLEARCGLGFGDKDVYLNVAGGLRITEPAADLAAAAALASSALDVALPQDCVVFGELSLSGE
VRPVSRMETRLKEAAKLGFGRALGPLAGLPEGGGALPVAGVARLTDAVRRIGDEIWTSLT

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=245909 CA606_RS10795 WP_096051138.1 2272313..2273695(+) (radA) [Caulobacter vibrioides strain CB13b1a]
ATGGCCCGCGACGGCGCCGTTTACGCCTGCCAGTCCTGTGGCGCGGTCCAGACCAAGTGGTCCGGCCAGTGTCCCGCCTG
CCAGAGCTGGAACACCCTGGTCGAGGAAGTCGGCGCCAGGCCGCCCGGCGCCCTGTCGACGACCAAGGCGACGCGTGTGC
GCGGCTTGCAGTTCACCGGCCTGGAAAGCGAGACCGCGCCCCCGCCCCGCATCCTGACCGGCGTAGACGAGTTTGACCGC
GTCTGCGGCGGCGGCGTGGTGCCCGGTTCGGCGCTGCTGATCGGCGGCGACCCGGGCGTGGGCAAGTCCACCCTGCTGCT
GCAGGTCTGCGCCAGCGCCGCCGCACGCGGCGTCTCCTGCGCCTATATCTCGGGCGAAGAGGCGGTCGAGCAGATCCGAG
GCCGCGCCGACCGCATGGGCCTCGCCAAGTCCAATGTCAGCCTCGCCGCCGAGACCGCGCTGCGCGACATCCTCGACGGC
TTGAAGCGCGACAACTTCGACCTCGTGGTTATCGACTCGATCCAGACGATGTGGAGCGACGCCCACGAGGCCGGGCCCGG
CACCGTCACCCAGGTCCGCGCCTGCGCCACCGAATTGGTGCGCCTGGCCAAAAAGAAGGGCGTGGCGATCCTCCTGGTCG
GCCACGTCACCAAGGACGGCCAGATCGCGGGCCCGCGCGTCGTCGAGCACCTCGTGGACGCCGTGCTCTCGTTCGAGGGC
GAGCGCGGCTATCCGTTCCGCATCCTGCGCGGCGCCAAGAACCGTTTCGGCGCGACCGACGAGATCGGCGTGTTCGAGAT
GGGCGATGTGGGCCTGCGCGAGGTCAAGAACCCCTCGGCCCTGTTCCTCAACGAGGGCGGCGAGCGCGCGGCCGGCGCGG
CGGTGTTCGCGGGCATCGAGGGGTCTCGGCCCGTGCTCGTGGAATTCCAGGCCCTGGTGGCCCCGTCCGCCTACGGAACG
CCGCGCCGCGCGGTCGTCGGCTGGGATTCCGGACGCCTCGCCATGGTGCTGGCGGTACTTGAGGCCCGATGCGGCCTTGG
TTTTGGCGACAAGGACGTCTATCTGAACGTCGCCGGCGGCCTGCGCATTACCGAACCGGCGGCGGATCTCGCGGCGGCGG
CGGCCCTGGCCTCTTCCGCCTTGGACGTCGCCCTGCCCCAGGACTGCGTCGTGTTCGGCGAACTCAGCCTGTCGGGCGAA
GTCCGCCCCGTCAGTCGGATGGAGACCCGTTTGAAGGAAGCCGCGAAACTGGGGTTTGGCCGCGCCCTCGGCCCGCTCGC
CGGCCTGCCTGAGGGCGGCGGCGCCCTGCCCGTGGCGGGCGTGGCGCGCCTAACGGACGCCGTCCGCCGGATCGGCGACG
AAATCTGGACCAGCCTGACGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(85-221)

Subunit ChlI of Mg-chelatase (ChlI)

(340-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A290MS02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.02

99.783

0.489
  radA Streptococcus pneumoniae Rx1

45.87

100

0.459
  radA Streptococcus pneumoniae D39

45.87

100

0.459
  radA Streptococcus pneumoniae R6

45.87

100

0.459
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.459
  radA Streptococcus mitis NCTC 12261

45.553

100

0.457
  radA Streptococcus mitis SK321

45.553

100

0.457

Multiple sequence alignment