Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CA607_RS09365 Genome accession   NZ_CP023314
Coordinates   1954184..1955566 (-) Length   460 a.a.
NCBI ID   WP_010919533.1    Uniprot ID   Q9A7R0
Organism   Caulobacter vibrioides strain CB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1949184..1960566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA607_RS09345 (CA607_09185) - 1950234..1950989 (-) 756 WP_010919529.1 SDR family NAD(P)-dependent oxidoreductase -
  CA607_RS09350 (CA607_09190) - 1951038..1952051 (-) 1014 WP_010919530.1 bile acid:sodium symporter family protein -
  CA607_RS09355 (CA607_09195) purF 1952071..1953573 (-) 1503 WP_010919531.1 amidophosphoribosyltransferase -
  CA607_RS09360 (CA607_09200) - 1953570..1954187 (-) 618 WP_010919532.1 CvpA family protein -
  CA607_RS09365 (CA607_09205) radA 1954184..1955566 (-) 1383 WP_010919533.1 DNA repair protein RadA Machinery gene
  CA607_RS09370 (CA607_09210) alr 1955640..1956734 (-) 1095 WP_010919534.1 alanine racemase -
  CA607_RS09375 (CA607_09215) - 1956774..1957460 (-) 687 WP_010919535.1 MarC family protein -
  CA607_RS09380 (CA607_09220) - 1957518..1958003 (-) 486 WP_010919536.1 PaaI family thioesterase -
  CA607_RS09385 (CA607_09225) - 1958101..1958700 (+) 600 WP_012640299.1 TetR/AcrR family transcriptional regulator -
  CA607_RS09390 (CA607_09230) - 1958715..1960238 (-) 1524 WP_010919538.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 47702.63 Da        Isoelectric Point: 5.5968

>NTDB_id=245900 CA607_RS09365 WP_010919533.1 1954184..1955566(-) (radA) [Caulobacter vibrioides strain CB1]
MARDGAVYACQSCGAVQTKWSGQCSACQSWNTLVEEVSAKPPGALSATKATRVRGLQFTGLESETAPPPRILTGVDEFDR
VCGGGVVPGSALLIGGDPGVGKSTLLLQVCASAAARGVSCAYISGEEAVEQIRGRADRMGLAKANVSLAAETALRDILDG
LKRDNFDLVVIDSIQTMWSDAHEAGPGTVTQVRACATELVRLAKKKGVAILLVGHVTKDGQIAGPRVVEHLVDAVLSFEG
ERGYPFRILRGAKNRFGATDEIGVFEMGDVGLREVKNPSALFLNEGGERAAGAAVFAGIEGSRPVLVEFQALVAPSAYGT
PRRAVVGWDSGRLAMVLAVLEARCGLGFGDKDVYLNVAGGLRITEPAADLAAAAALASSALDVALPQDCVVFGELSLSGE
VRPVSRMETRLKEAAKLGFGRALGPLAGLPEGGGALPVAGVARLTDAVRRIGDEIWTSLT

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=245900 CA607_RS09365 WP_010919533.1 1954184..1955566(-) (radA) [Caulobacter vibrioides strain CB1]
ATGGCCCGCGACGGCGCCGTTTACGCCTGCCAGTCCTGTGGCGCGGTCCAGACCAAGTGGTCGGGACAGTGCTCGGCCTG
CCAAAGCTGGAACACCCTGGTCGAGGAGGTCAGCGCCAAGCCGCCGGGAGCCCTGTCGGCGACCAAGGCCACCCGCGTGC
GCGGCCTGCAGTTCACGGGCCTGGAAAGCGAGACCGCGCCCCCGCCCCGCATCCTGACCGGCGTGGACGAGTTCGACCGG
GTGTGCGGCGGCGGGGTGGTTCCGGGTTCGGCGCTGCTGATCGGCGGCGACCCGGGCGTGGGCAAGTCCACCCTGCTGCT
GCAGGTCTGCGCCAGCGCCGCCGCGCGCGGCGTCTCCTGCGCCTATATCTCCGGCGAAGAGGCCGTGGAGCAGATCCGGG
GCCGCGCCGACCGTATGGGCCTCGCCAAGGCCAATGTCAGCCTGGCCGCCGAAACCGCGCTGCGTGACATCCTGGATGGC
CTGAAGCGCGACAACTTCGACCTGGTGGTTATCGACTCGATCCAGACGATGTGGAGCGACGCCCACGAGGCCGGTCCCGG
CACCGTCACCCAGGTCCGCGCCTGCGCCACCGAGCTGGTGCGCCTGGCCAAGAAGAAGGGCGTTGCGATCCTCCTGGTCG
GCCACGTCACCAAGGACGGCCAGATCGCCGGCCCGCGCGTCGTCGAGCACCTCGTGGACGCCGTGCTCTCGTTCGAGGGC
GAGCGCGGCTATCCGTTCCGGATCCTGCGCGGCGCCAAGAACCGCTTTGGCGCGACCGACGAGATCGGCGTGTTCGAGAT
GGGCGATGTGGGCCTGCGCGAGGTCAAGAACCCCTCGGCCCTGTTTCTCAACGAGGGCGGCGAGCGCGCCGCCGGCGCGG
CGGTGTTCGCCGGCATCGAGGGCTCGCGCCCCGTGCTCGTGGAATTCCAGGCTCTGGTCGCGCCTTCGGCCTATGGAACG
CCGCGCCGCGCCGTCGTCGGCTGGGACTCTGGACGCCTCGCCATGGTGCTCGCCGTGCTCGAGGCCCGATGCGGCCTTGG
TTTTGGCGACAAGGACGTCTATCTGAACGTCGCCGGCGGCCTGCGCATTACCGAACCGGCGGCGGATCTCGCGGCGGCGG
CGGCCCTGGCCTCCTCCGCCCTGGACGTCGCCCTGCCCCAGGACTGCGTCGTGTTCGGCGAACTCAGCCTGTCGGGCGAA
GTCCGCCCGGTCAGTCGGATGGAGACCCGTTTGAAGGAAGCCGCGAAACTGGGGTTTGGCCGCGCGCTCGGCCCGCTCGC
CGGCCTGCCGGAAGGCGGCGGCGCCCTGCCCGTGGCGGGCGTGGCGCGGTTGACGGACGCCGTCCGCCGGATCGGCGACG
AAATCTGGACCAGCCTGACGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(85-221)

Subunit ChlI of Mg-chelatase (ChlI)

(340-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9A7R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.02

99.783

0.489
  radA Streptococcus pneumoniae Rx1

45.435

100

0.454
  radA Streptococcus pneumoniae D39

45.435

100

0.454
  radA Streptococcus pneumoniae R6

45.435

100

0.454
  radA Streptococcus pneumoniae TIGR4

45.435

100

0.454
  radA Streptococcus mitis NCTC 12261

45.119

100

0.452
  radA Streptococcus mitis SK321

45.119

100

0.452

Multiple sequence alignment