Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   CMV05_RS20450 Genome accession   NZ_CP023311
Coordinates   947936..949036 (-) Length   366 a.a.
NCBI ID   WP_094133943.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 942936..954036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS20435 (CMV05_20435) - 943896..944513 (+) 618 WP_172859079.1 flagellar brake protein -
  CMV05_RS20445 (CMV05_20445) luxQ 945374..947920 (-) 2547 WP_096037122.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  CMV05_RS20450 (CMV05_20450) luxP 947936..949036 (-) 1101 WP_094133943.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  CMV05_RS20455 (CMV05_20455) - 949280..950431 (-) 1152 WP_017046397.1 conjugal transfer protein TraF -
  CMV05_RS20460 (CMV05_20460) - 950527..950850 (-) 324 WP_013867913.1 GIY-YIG nuclease family protein -
  CMV05_RS20465 (CMV05_20465) - 950851..951504 (-) 654 WP_094124983.1 YceH family protein -
  CMV05_RS20470 (CMV05_20470) - 951562..951765 (-) 204 WP_026028336.1 hypothetical protein -
  CMV05_RS20475 (CMV05_20475) - 951956..952273 (+) 318 WP_010319897.1 DUF496 family protein -
  CMV05_RS20480 (CMV05_20480) - 952581..952832 (+) 252 WP_013867916.1 YgjV family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41693.31 Da        Isoelectric Point: 6.0602

>NTDB_id=245890 CMV05_RS20450 WP_094133943.1 947936..949036(-) (luxP) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MRKILLLSFVFSVSLAASTQAAAQVLNGYWRYQEFLDLNPAQQALTDQMIQAVRQPPALLSIEQDKPIHISVVYPGQQVS
DYWARNIKAFEMRLDELGIRYQINQVFTRPNVDIRQQSLSLMEAIRNKSDYLVFTLDTIRHRKFIEQLLSSNQTKIILQN
ITTPVKSWGDRQPFMYVGFDHEIGTMKLVDYYKKSAPKNSAYSVLYYSEGYVSDARGDSFIQEMSRDSKYHLASSFYTKA
TRDSAFDATLRILKQTPDINFIYACSTDVALGAMDALQQQNREDITLNGWGGGEAELDALQNSTLDVTIMRVNDDAGVAM
AEAIKWDLEGKPVPTVYSGDFELVTKEVSSAYIEKLKKRAFRYSDH

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=245890 CMV05_RS20450 WP_094133943.1 947936..949036(-) (luxP) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGAGAAAAATCCTGCTCCTTTCATTTGTATTCAGTGTCAGTTTGGCAGCCTCCACTCAGGCTGCAGCGCAAGTTTTAAA
TGGCTATTGGCGATATCAAGAGTTTTTAGATCTTAATCCTGCGCAACAGGCTCTTACCGACCAGATGATACAGGCAGTGC
GTCAACCTCCTGCTTTACTCTCAATAGAGCAAGATAAACCTATTCATATTTCTGTTGTTTATCCCGGTCAACAAGTTTCC
GATTATTGGGCGCGCAATATCAAAGCCTTTGAGATGCGTTTAGATGAACTTGGGATTAGATACCAAATTAACCAAGTCTT
CACTCGTCCGAATGTCGATATTCGCCAACAAAGTTTATCGTTGATGGAAGCGATCAGAAATAAATCCGATTACTTGGTGT
TTACGCTTGATACCATCCGCCACCGTAAATTTATCGAGCAGTTGTTAAGTTCAAATCAAACCAAAATTATTCTGCAAAAT
ATCACTACGCCAGTAAAAAGTTGGGGAGATCGTCAGCCTTTTATGTACGTGGGGTTTGATCATGAAATTGGCACAATGAA
ACTGGTGGATTACTACAAAAAGTCGGCGCCAAAGAATAGTGCTTATTCCGTCCTCTATTATTCTGAAGGCTATGTTAGCG
ATGCTCGCGGTGATAGTTTTATCCAAGAAATGAGTCGAGACAGCAAATATCACTTGGCCTCTTCGTTTTATACAAAAGCG
ACACGAGATAGTGCATTTGATGCAACTTTGCGTATTCTTAAACAAACACCAGATATTAATTTTATTTACGCATGCTCTAC
TGATGTTGCACTCGGTGCCATGGATGCGTTGCAGCAGCAAAATAGAGAAGATATTACGTTAAACGGCTGGGGCGGTGGTG
AGGCTGAATTGGACGCGCTGCAAAATAGCACACTTGATGTGACTATCATGCGTGTCAATGATGATGCCGGTGTTGCTATG
GCGGAAGCCATTAAGTGGGATCTTGAAGGAAAGCCGGTACCTACGGTTTACTCTGGTGATTTTGAATTGGTAACCAAAGA
GGTCTCTTCAGCGTATATTGAAAAGCTCAAAAAACGAGCATTTCGTTACTCTGACCATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.889

98.361

0.628

Multiple sequence alignment