Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY88_RS05755 Genome accession   NZ_CP028740
Coordinates   1217321..1217926 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain A35     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1212321..1222926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY88_RS23260 - 1212875..1212973 (+) 99 Protein_1105 hypothetical protein -
  AOY88_RS05725 (AOY88_06110) rsmS 1213026..1213187 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY88_RS05730 (AOY88_06115) priC 1213201..1213728 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  AOY88_RS05735 (AOY88_06120) ybaN 1213798..1214175 (+) 378 WP_001188905.1 DUF454 family protein -
  AOY88_RS05740 (AOY88_06130) apt 1214328..1214879 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY88_RS05745 (AOY88_06135) dnaX 1215008..1216939 (+) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  AOY88_RS05750 (AOY88_06140) ybaB 1216992..1217321 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY88_RS05755 (AOY88_06145) recR 1217321..1217926 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AOY88_RS05760 (AOY88_06150) htpG 1218036..1219910 (+) 1875 WP_000678208.1 molecular chaperone HtpG -
  AOY88_RS05765 (AOY88_06160) adk 1220091..1220735 (+) 645 WP_001220233.1 adenylate kinase -
  AOY88_RS05770 (AOY88_06165) hemH 1220971..1221933 (+) 963 WP_001250088.1 ferrochelatase -
  AOY88_RS05775 (AOY88_06170) aes 1221930..1222889 (-) 960 WP_000801846.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=245883 AOY88_RS05755 WP_001195025.1 1217321..1217926(+) (recR) [Escherichia coli strain A35]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=245883 AOY88_RS05755 WP_001195025.1 1217321..1217926(+) (recR) [Escherichia coli strain A35]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443