Detailed information NTG0245869

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: CMV05_RS06080
• Genome accession: NZ_CP023310
• Coordinates: 1289045..1290469 (-)
• Length: 474 a.a.
• NCBI ID: WP_096036267.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain VIB12 isolate Sea bass
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1284045..1295469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CMV05_RS06065 (CMV05_06065)	cdd	1286812..1287699 (-)	888	WP_094133303.1	cytidine deaminase	-
CMV05_RS06070 (CMV05_06070)	-	1287908..1288588 (-)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
CMV05_RS06075 (CMV05_06075)	-	1288588..1288920 (-)	333	WP_096036787.1	CidA/LrgA family protein	-
CMV05_RS06080 (CMV05_06080)	sbcB	1289045..1290469 (-)	1425	WP_096036267.1	exodeoxyribonuclease I	Machinery gene
CMV05_RS06085 (CMV05_06085)	-	1290621..1291988 (-)	1368	WP_096036268.1	L-cystine transporter	-
CMV05_RS06090 (CMV05_06090)	-	1292265..1294400 (-)	2136	WP_096036269.1	type I secretion system permease/ATPase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54649.12 Da
• Isoelectric Point: 5.4372

>NTDB_id=245869 CMV05_RS06080 WP_096036267.1 1289045..1290469(-) (sbcB) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAD
HIGVDRNLCLEHLALIKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDSFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=245869 CMV05_RS06080 WP_096036267.1 1289045..1290469(-) (sbcB) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCAGGCGTTCGCACCGATATGGATTTTAATATTATTGGCGAACCACTGGTCATCTATTGCCAACCACCAGCGG
ACTATTTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTGGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGTCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTACACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGCCCAGAAGGCATCAACTGGCCTGAAAATGACGAAGGCTTTACC
AGTTTTAAGCTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCGAATGCCCACGATGCTATGGCTGATGTTATCGC
CACCATTGAGCTGGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTACCCTGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGAGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACAGTTTCTTCTCTCCAG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCAGTCAATCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTGACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTGGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.184	99.789	0.81