Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CMV05_RS02475 Genome accession   NZ_CP023310
Coordinates   500308..500826 (+) Length   172 a.a.
NCBI ID   WP_010319518.1    Uniprot ID   A0A233HL62
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 495308..505826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS02465 (CMV05_02465) - 495720..498575 (+) 2856 WP_096035995.1 pitrilysin family protein -
  CMV05_RS02470 (CMV05_02470) gshA 498678..500243 (+) 1566 WP_026028539.1 glutamate--cysteine ligase -
  CMV05_RS02475 (CMV05_02475) luxS 500308..500826 (+) 519 WP_010319518.1 S-ribosylhomocysteine lyase Regulator
  CMV05_RS02480 (CMV05_02480) - 500910..502184 (-) 1275 WP_017046996.1 CNNM domain-containing protein -
  CMV05_RS02485 (CMV05_02485) - 502268..503062 (-) 795 WP_026027563.1 inner membrane protein YpjD -
  CMV05_RS02490 (CMV05_02490) ffh 503365..504747 (+) 1383 WP_019281904.1 signal recognition particle protein -
  CMV05_RS02495 (CMV05_02495) rpsP 504962..505210 (+) 249 WP_010319522.1 30S ribosomal protein S16 -
  CMV05_RS02500 (CMV05_02500) rimM 505240..505794 (+) 555 WP_013857691.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18955.76 Da        Isoelectric Point: 5.2114

>NTDB_id=245859 CMV05_RS02475 WP_010319518.1 500308..500826(+) (luxS) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGHDVEIIDISP
MGCRTGFYMSLIGAPTEAQVAQAWLAAMHDVLKVESQDQIPELNEYQCGTASMHSLTEAKEIAQAIITAGIAVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=245859 CMV05_RS02475 WP_010319518.1 500308..500826(+) (luxS) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGCCATTACTCGACAGTTTTACTGTAGATCACACTCGTATGCATGCGCCTGCGGTACGTGTGGCAAAAAATATGCAGAC
GCCTAAAGGGGATACAATCACCGTATTTGATCTCCGTTTTACTGCTCCAAACAAAGATATTCTTTCGGAAAAAGGGATCC
ACACTTTAGAACATTTATATGCTGGCTTTATGCGCGCGCACTTAAATGGTCATGACGTAGAAATCATCGACATCTCACCT
ATGGGCTGCCGCACAGGTTTTTACATGAGTTTGATTGGCGCGCCAACAGAAGCGCAAGTGGCGCAAGCGTGGTTAGCGGC
GATGCATGATGTGCTAAAAGTAGAGAGCCAAGATCAGATCCCTGAACTAAACGAATACCAATGTGGTACAGCCTCAATGC
ACTCGTTAACAGAAGCTAAAGAGATTGCTCAAGCGATTATCACGGCAGGTATTGCGGTGAATAAAAATGATGAGCTTGCT
TTACCTGAGTCGATGCTCAAAGAGCTGAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment