Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CMV05_RS02315 Genome accession   NZ_CP023310
Coordinates   469830..470831 (+) Length   333 a.a.
NCBI ID   WP_096035986.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 470990..473273 469830..470831 flank 159


Gene organization within MGE regions


Location: 469830..473273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS02315 (CMV05_02315) rpoS 469830..470831 (+) 1002 WP_096035986.1 RNA polymerase sigma factor RpoS Regulator
  CMV05_RS02320 (CMV05_02320) - 470990..472543 (-) 1554 WP_096036778.1 IS66 family transposase -
  CMV05_RS02325 (CMV05_02325) tnpB 472603..472956 (-) 354 WP_096035987.1 IS66 family insertion sequence element accessory protein TnpB -
  CMV05_RS02330 (CMV05_02330) - 472953..473273 (-) 321 WP_094499630.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38300.24 Da        Isoelectric Point: 4.4454

>NTDB_id=245856 CMV05_RS02315 WP_096035986.1 469830..470831(+) (rpoS) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
VNNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=245856 CMV05_RS02315 WP_096035986.1 469830..470831(+) (rpoS) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGATTTGATGCCTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCCCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTGGCTTTACTCGATCTAATTGAAGAGGGTAATTTAGGCTTGATCCGCGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGCACGGCTCGCGAGTTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTGC
GTCTGAACGAGCGTATCAGTTCTGTTGATACACCGATTGGCGGCGATGGTGACAAAGCACTACTCGATATCATCCCTGAT
GTGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTAAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGACTATTAGGTTATGAACCGTCCACCTTAGAAGAGGTAGGGCGCG
AAATTAACTTAACTCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGCCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 region 3 (Sigma70_r3)

(174-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871

Multiple sequence alignment