Detailed information NTG0245801

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY89_RS06795
• Genome accession: NZ_CP028739
• Coordinates: 1423186..1424178 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A36
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1418186..1429178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY89_RS06765 (AOY89_07205)	ispD	1418247..1418957 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY89_RS06770 (AOY89_07210)	ispF	1418957..1419436 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY89_RS06775 (AOY89_07215)	truD	1419433..1420482 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
AOY89_RS06780 (AOY89_07220)	surE	1420463..1421224 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY89_RS06785 (AOY89_07225)	pcm	1421218..1421844 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY89_RS06790 (AOY89_07230)	nlpD	1422029..1423123 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY89_RS06795 (AOY89_07235)	rpoS	1423186..1424178 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY89_RS06800 (AOY89_07240)	-	1424349..1424900 (-)	552	WP_001179443.1	flavodoxin family protein	-
AOY89_RS06805 (AOY89_07245)	-	1425125..1426168 (+)	1044	WP_001161576.1	MBL fold metallo-hydrolase	-
AOY89_RS06810 (AOY89_07250)	ygbN	1426311..1427675 (-)	1365	WP_000104433.1	GntP family transporter	-
AOY89_RS06815 (AOY89_07255)	ygbM	1427764..1428540 (-)	777	WP_001136913.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=245801 AOY89_RS06795 WP_000081550.1 1423186..1424178(+) (rpoS) [Escherichia coli strain A36]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=245801 AOY89_RS06795 WP_000081550.1 1423186..1424178(+) (rpoS) [Escherichia coli strain A36]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715