Detailed information NTG0024574

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VF_RS10730
• Genome accession: NC_006840
• Coordinates: 2303271..2304236 (-)
• Length: 321 a.a.
• NCBI ID: WP_011262534.1
• Uniprot ID: Q5E334
• Organism: Aliivibrio fischeri ES114
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2298271..2309236

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VF_RS10710 (VF2063)	metA	2298359..2299301 (+)	943	Protein_2082	homoserine O-succinyltransferase MetA	-
VF_RS10715 (VF2064)	-	2299566..2300895 (+)	1330	Protein_2083	anaerobic C4-dicarboxylate transporter	-
VF_RS10720 (VF2065)	-	2300968..2302182 (-)	1215	WP_005420686.1	NupC/NupG family nucleoside CNT transporter	-
VF_RS10725 (VF2066)	-	2302570..2303133 (+)	564	WP_011262533.1	DUF2301 domain-containing membrane protein	-
VF_RS10730 (VF2067)	rpoS	2303271..2304236 (-)	966	WP_011262534.1	RNA polymerase sigma factor RpoS	Regulator
VF_RS10735 (VF2068)	-	2304291..2305280 (-)	990	WP_047863473.1	peptidoglycan DD-metalloendopeptidase family protein	-
VF_RS10740 (VF2069)	-	2305294..2305920 (-)	627	WP_011262536.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VF_RS10745 (VF2070)	surE	2305920..2306693 (-)	774	WP_011262537.1	5'/3'-nucleotidase SurE	-
VF_RS10750 (VF2071)	truD	2306701..2307756 (-)	1056	WP_011262538.1	tRNA pseudouridine(13) synthase TruD	-
VF_RS10755 (VF2072)	ispF	2307768..2308244 (-)	477	WP_011262539.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VF_RS10760 (VF2073)	ispD	2308244..2308960 (-)	717	WP_011262540.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36607.59 Da
• Isoelectric Point: 4.6691

>NTDB_id=24574 VF_RS10730 WP_011262534.1 2303271..2304236(-) (rpoS) [Aliivibrio fischeri ES114]
MSKSNAVTKEVEEFDLDTINDAELTSIEEESERLEVSSSQKVMDATQLYLGEIGFSPLLTAEEEVYFSRLALKGDEAARA
RMIESNLRLVVKIARRYNHRGLALLDLVEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVV
KELNVYLRAARELSQKLDHEPTPEEIAEKLDKPVSDVSRMLRLNERVASVDSMVAGESDKALLDILPDTKNSDPESETQK
DDINTSLVGWLGQLNPKQKEVVARRFGLLGYEAATLEQVGIEIGLTRERVRQIQVEGLRRLREIMTNQGLNMETLFAVEE
Y

Nucleotide

• Length: 966 bp

>NTDB_id=24574 VF_RS10730 WP_011262534.1 2303271..2304236(-) (rpoS) [Aliivibrio fischeri ES114]
ATGAGTAAAAGCAATGCAGTAACTAAAGAAGTTGAAGAGTTCGATTTAGACACAATTAATGATGCTGAATTAACCAGTAT
TGAAGAAGAGTCTGAACGTCTTGAAGTAAGCAGTTCACAGAAAGTTATGGATGCAACGCAACTGTATCTTGGTGAAATTG
GCTTTTCTCCACTACTAACAGCAGAAGAAGAAGTTTATTTTAGTCGCTTAGCCTTAAAAGGTGATGAAGCCGCTCGAGCT
CGAATGATTGAGAGTAACCTTCGATTGGTTGTGAAAATTGCTCGTCGTTATAATCACCGTGGTCTTGCTTTATTGGATTT
GGTTGAAGAGGGAAATCTTGGCCTGATCCGAGCCGTTGAAAAGTTTGATCCAGAAAGAGGCTTCCGATTCTCTACTTACG
CCACATGGTGGATACGTCAAACCATTGAACGTGCCATTATGAACCAAACGCGTACCATTCGTTTACCTATTCATGTTGTA
AAAGAGCTTAACGTTTATTTGCGTGCAGCTCGTGAACTCTCTCAAAAGCTTGATCATGAACCAACACCAGAAGAAATAGC
TGAAAAGCTCGATAAGCCAGTGAGCGATGTTAGTCGAATGCTACGTTTAAATGAGCGTGTCGCTTCAGTCGACTCTATGG
TGGCTGGTGAATCAGATAAAGCGTTATTAGATATCCTTCCTGATACTAAAAATAGTGACCCAGAGTCAGAAACACAAAAG
GATGATATTAATACGTCATTGGTGGGCTGGTTAGGTCAATTAAACCCTAAACAAAAAGAAGTTGTTGCCCGTCGTTTTGG
TTTACTTGGTTATGAAGCTGCAACATTAGAACAAGTTGGTATTGAAATTGGTTTGACTCGTGAACGTGTAAGACAGATAC
AAGTAGAAGGCTTACGTCGTTTAAGAGAGATCATGACGAATCAAGGCTTGAATATGGAAACATTATTTGCAGTTGAAGAA
TACTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (162-236)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (44-77)

• Sigma-70 region 2 (Sigma70_r2) (82-151)

• Sigma-70, region 4 (Sigma70_r4) (250-303)

3D structure

• AlphaFold DB: Q5E334

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	74.474	100	0.773