Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CKY39_RS28290 Genome accession   NZ_CP023284
Coordinates   6120805..6121203 (-) Length   132 a.a.
NCBI ID   WP_095746783.1    Uniprot ID   -
Organism   Variovorax boronicumulans strain J1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6115805..6126203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKY39_RS28275 (CKY39_28275) - 6117519..6119561 (-) 2043 WP_167395066.1 methyl-accepting chemotaxis protein -
  CKY39_RS28280 (CKY39_28280) - 6119888..6120420 (-) 533 Protein_5725 chemotaxis protein CheW -
  CKY39_RS28285 (CKY39_28285) - 6120440..6120805 (-) 366 WP_062479114.1 response regulator -
  CKY39_RS28290 (CKY39_28290) pilG 6120805..6121203 (-) 399 WP_095746783.1 response regulator Regulator
  CKY39_RS28295 (CKY39_28295) - 6121285..6121455 (-) 171 WP_007838397.1 rubredoxin -
  CKY39_RS28300 (CKY39_28300) thiD 6121567..6122532 (+) 966 WP_095746784.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CKY39_RS28305 (CKY39_28305) hemL 6122532..6123812 (+) 1281 WP_095746785.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CKY39_RS28310 (CKY39_28310) - 6123829..6125229 (-) 1401 WP_095746786.1 amidase family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14690.92 Da        Isoelectric Point: 7.9048

>NTDB_id=245730 CKY39_RS28290 WP_095746783.1 6120805..6121203(-) (pilG) [Variovorax boronicumulans strain J1]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQVYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=245730 CKY39_RS28290 WP_095746783.1 6120805..6121203(-) (pilG) [Variovorax boronicumulans strain J1]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTGGTCATCGATGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCTCACC
TGATTTTCTGCGACATCCTGATGCCTCGCCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCGCATTTCTCC
AATGTCCCGGTCGTCATGCTGTCTTCGAAAGATGGCGTATTCGACAAGGCCCGCGGCCGCATGGTCGGGTCCCAGGTCTA
TCTCACCAAGCCATTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATTGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment