Detailed information NTG0245719

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY91_RS05265
• Genome accession: NZ_CP028738
• Coordinates: 1091090..1092082 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A38
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1086090..1097082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY91_RS05235 (AOY91_05620)	ispD	1086151..1086861 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY91_RS05240 (AOY91_05625)	ispF	1086861..1087340 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY91_RS05245 (AOY91_05630)	truD	1087337..1088386 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AOY91_RS05250 (AOY91_05635)	surE	1088367..1089128 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY91_RS05255 (AOY91_05640)	pcm	1089122..1089748 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY91_RS05260 (AOY91_05645)	nlpD	1089933..1091027 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY91_RS05265 (AOY91_05650)	rpoS	1091090..1092082 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY91_RS05270 (AOY91_05655)	-	1092203..1092610 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
AOY91_RS05275 (AOY91_05660)	-	1092757..1093350 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY91_RS05280 (AOY91_05665)	-	1093350..1094777 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY91_RS05285 (AOY91_05670)	-	1094788..1095024 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY91_RS05290 (AOY91_05675)	ygbN	1095063..1096427 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=245719 AOY91_RS05265 WP_000081550.1 1091090..1092082(+) (rpoS) [Escherichia coli strain A38]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=245719 AOY91_RS05265 WP_000081550.1 1091090..1092082(+) (rpoS) [Escherichia coli strain A38]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715