Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   VF_RS08760 Genome accession   NC_006840
Coordinates   1896827..1897429 (-) Length   200 a.a.
NCBI ID   WP_011262239.1    Uniprot ID   Q5E466
Organism   Aliivibrio fischeri ES114     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1891827..1902429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF_RS08740 (VF1681) - 1892614..1894011 (-) 1398 WP_047863497.1 coniferyl aldehyde dehydrogenase -
  VF_RS08745 (VF1682) - 1894248..1895594 (+) 1347 WP_011262236.1 anti-phage deoxyguanosine triphosphatase -
  VF_RS08750 (VF1683) - 1895655..1896278 (-) 624 WP_011262237.1 tRNA-uridine aminocarboxypropyltransferase -
  VF_RS08755 (VF1684) rrtA 1896292..1896855 (+) 564 WP_011262238.1 rhombosortase -
  VF_RS08760 (VF1685) recR 1896827..1897429 (-) 603 WP_011262239.1 recombination mediator RecR Machinery gene
  VF_RS08765 (VF1686) - 1897531..1897866 (-) 336 WP_005420010.1 YbaB/EbfC family nucleoid-associated protein -
  VF_RS08770 (VF1687) dnaX 1897972..1900098 (-) 2127 WP_011262240.1 DNA polymerase III subunit gamma/tau -
  VF_RS08775 (VF1688) apt 1900202..1900747 (-) 546 WP_011262241.1 adenine phosphoribosyltransferase -
  VF_RS08780 - 1900877..1901245 (-) 369 WP_080966762.1 YbaN family protein -
  VF_RS08785 (VF1689) - 1901307..1902413 (-) 1107 WP_011262244.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21653.74 Da        Isoelectric Point: 5.2570

>NTDB_id=24570 VF_RS08760 WP_011262239.1 1896827..1897429(-) (recR) [Aliivibrio fischeri ES114]
MRTSGLLEQLMESLRCLPGVGPKSAQRMAFHLLQRNRQGGMQLADALSQAMSEIGHCSECRTFTEEDTCAICLNPKRQAS
GEMCIVESPADIVAVEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDLLDHRLNRGDIKEVILATNPTVEGEATAHYIAEL
CQEHQVPASRIAHGVPMGGELELVDGTTLSHSILGRQKLY

Nucleotide


Download         Length: 603 bp        

>NTDB_id=24570 VF_RS08760 WP_011262239.1 1896827..1897429(-) (recR) [Aliivibrio fischeri ES114]
ATGCGAACCAGTGGTTTACTAGAACAATTAATGGAATCATTACGATGTCTACCAGGCGTTGGCCCAAAATCAGCTCAGCG
AATGGCTTTTCACTTGCTTCAACGTAATCGCCAAGGGGGAATGCAGCTAGCTGATGCTCTTTCTCAAGCGATGTCAGAGA
TTGGTCATTGCTCGGAATGTCGAACATTTACTGAGGAAGATACCTGCGCTATTTGTTTGAATCCAAAGCGTCAAGCAAGT
GGTGAAATGTGTATTGTTGAAAGTCCTGCAGATATTGTTGCGGTAGAAGCAACAGGGCAGTTTTCTGGGCGTTACTTTGT
ACTAATGGGACATTTATCGCCACTGGATGGTATTGGTCCAAGCGATATTGGTTTAGATTTATTAGATCATCGTTTGAATC
GTGGTGATATTAAAGAAGTTATTCTTGCAACTAACCCAACTGTTGAGGGTGAAGCAACGGCACACTATATTGCTGAGCTT
TGCCAAGAGCACCAAGTACCAGCTAGTCGAATAGCACATGGTGTTCCAATGGGCGGTGAATTAGAATTAGTTGATGGTAC
AACGTTATCTCACTCTATTTTAGGCCGTCAGAAGCTTTATTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E466

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.714

99.5

0.425
  recR Bacillus subtilis subsp. subtilis str. 168

44.041

96.5

0.425

Multiple sequence alignment