Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CLM75_RS24075 Genome accession   NZ_CP023272
Coordinates   5252840..5254207 (-) Length   455 a.a.
NCBI ID   WP_034107134.1    Uniprot ID   A0A855QI93
Organism   Pseudomonas lurida strain MYb11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5247840..5259207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM75_RS24055 (CLM75_23900) yjiA 5248838..5249797 (-) 960 WP_105162900.1 GTPase -
  CLM75_RS24060 (CLM75_23905) - 5249954..5250151 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  CLM75_RS24065 (CLM75_23910) - 5250167..5252233 (-) 2067 WP_034107129.1 carbon starvation CstA family protein -
  CLM75_RS24070 (CLM75_23915) - 5252408..5252776 (+) 369 WP_034107132.1 PilZ domain-containing protein -
  CLM75_RS24075 (CLM75_23920) radA 5252840..5254207 (-) 1368 WP_034107134.1 DNA repair protein RadA Machinery gene
  CLM75_RS24080 (CLM75_23925) - 5254243..5254791 (-) 549 WP_034107136.1 ankyrin repeat domain-containing protein -
  CLM75_RS24085 (CLM75_23930) katB 5254857..5256398 (-) 1542 WP_105162901.1 catalase KatB -
  CLM75_RS24090 (CLM75_23935) mscL 5256686..5257105 (+) 420 WP_034107141.1 large-conductance mechanosensitive channel protein MscL -
  CLM75_RS24095 (CLM75_23940) - 5257150..5257926 (-) 777 WP_105162902.1 ferredoxin--NADP reductase -
  CLM75_RS24100 (CLM75_23945) - 5258306..5259016 (+) 711 WP_034107145.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48801.31 Da        Isoelectric Point: 7.1317

>NTDB_id=245676 CLM75_RS24075 WP_034107134.1 5252840..5254207(-) (radA) [Pseudomonas lurida strain MYb11]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGIRIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=245676 CLM75_RS24075 WP_034107134.1 5252840..5254207(-) (radA) [Pseudomonas lurida strain MYb11]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCTGGCCAGTGCACCGAGTG
CGGCGCATGGAACACCCTGACTGAAACCATGATCGAGAGTGGCGGTGCTGCGGCCCCCACCGGGCGTGCCGGTTGGACGG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGCTTTTCCACAGCCTCCGGCGAGTTG
GACCGCGTGCTGGGCGGCGGCTTGGTGGACGGCTCGGTCGTCCTGATCGGTGGCGACCCCGGTATCGGCAAGTCGACCAT
CCTGTTGCAGACCCTCTGTAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGTGAAGAGTCCCAGCAACAAGTCG
CCATGCGCGCCCGTCGCCTGGGTTTGCCCCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATTGCC
ACGGCCCGTATCGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAATTGCAGTCCGCGCC
GGGCGGTGTCTCCCAAGTGCGCGAGAGTGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAAGAAGGCGCGCTGGCCGGGCCACGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGTGAGTCCGACGGACGCCTGCGCCTGCTACGGGCGGTGAAGAACCGCTTCGGCGCCGTGAACGAGTTGGGTGTGTTCGC
CATGACTGACCGCGGGTTGAAAGAAGTCTCCAACCCATCGGCGATCTTTCTGACCCGCGCCCAGGAGGAAGTCCCGGGCA
GCGTCGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCATTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGCGTGACCCTGGGCCTGGATCAGAACCGCCTGGCGATGCTGCTGGCGGTATTGCACCGTCACGGCGGCAT
CCCGACCCACGACCAGGACGTGTTTCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCTGCGGTGATGTCGAGCCTGCGTAACCGGCCGCTGCCCCATGATCTGCTGGTGTTCGGTGAAGTCGGCTTGTCGGGT
GAAGTCCGCCCGGTGCCCAGTGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCATGGTTTCAAGCGGGCGATCGTGCCTAA
GGGCAATGCGCCCAAGGAATCGCCACCGGGCATTCGGATCATTGGGGTGACGCGCCTGGAACAGGCCCTGGATGCACTCT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468
  radA Streptococcus pneumoniae Rx1

46.711

100

0.468
  radA Streptococcus pneumoniae D39

46.711

100

0.468
  radA Streptococcus pneumoniae R6

46.711

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.711

100

0.468

Multiple sequence alignment