Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY92_RS05550 Genome accession   NZ_CP028737
Coordinates   1146294..1146809 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain A39     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1141294..1151809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY92_RS05510 (AOY92_05890) csrA 1142155..1142340 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AOY92_RS05535 (AOY92_05915) yqaB 1143524..1144090 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY92_RS05540 (AOY92_05920) yqaA 1144087..1144515 (+) 429 WP_001287457.1 YqaA family protein -
  AOY92_RS05545 (AOY92_05925) gshA 1144588..1146144 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AOY92_RS05550 (AOY92_05930) luxS 1146294..1146809 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  AOY92_RS05555 (AOY92_05935) emrB 1146873..1148411 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY92_RS05560 (AOY92_05940) emrA 1148428..1149600 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY92_RS05565 (AOY92_05945) emrR 1149727..1150257 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY92_RS05570 (AOY92_05950) ygaH 1150348..1150683 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AOY92_RS05575 (AOY92_05955) ygaZ 1150673..1151410 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=245642 AOY92_RS05550 WP_001130210.1 1146294..1146809(+) (luxS) [Escherichia coli strain A39]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=245642 AOY92_RS05550 WP_001130210.1 1146294..1146809(+) (luxS) [Escherichia coli strain A39]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737