Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CLM72_RS24350 Genome accession   NZ_CP023269
Coordinates   5335121..5336488 (-) Length   455 a.a.
NCBI ID   WP_003194313.1    Uniprot ID   A0AAJ3JSD5
Organism   Pseudomonas sp. MYb193     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5330121..5341488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM72_RS24330 (CLM72_24165) yjiA 5331083..5332042 (-) 960 WP_105228583.1 GTPase -
  CLM72_RS24335 (CLM72_24170) - 5332232..5332429 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  CLM72_RS24340 (CLM72_24175) - 5332444..5334510 (-) 2067 WP_003194310.1 carbon starvation CstA family protein -
  CLM72_RS24345 (CLM72_24180) - 5334685..5335053 (+) 369 WP_105228585.1 PilZ domain-containing protein -
  CLM72_RS24350 (CLM72_24185) radA 5335121..5336488 (-) 1368 WP_003194313.1 DNA repair protein RadA Machinery gene
  CLM72_RS24355 (CLM72_24190) - 5336524..5337063 (-) 540 WP_105228587.1 ankyrin repeat domain-containing protein -
  CLM72_RS24360 (CLM72_24195) katB 5337121..5338662 (-) 1542 WP_105228589.1 catalase KatB -
  CLM72_RS24365 (CLM72_24200) mscL 5338950..5339366 (+) 417 WP_014720019.1 large-conductance mechanosensitive channel protein MscL -
  CLM72_RS24370 (CLM72_24205) - 5339408..5340184 (-) 777 WP_019818025.1 ferredoxin--NADP reductase -
  CLM72_RS24375 (CLM72_24210) - 5340632..5341342 (+) 711 WP_105228591.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48757.26 Da        Isoelectric Point: 6.8987

>NTDB_id=245621 CLM72_RS24350 WP_003194313.1 5335121..5336488(-) (radA) [Pseudomonas sp. MYb193]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=245621 CLM72_RS24350 WP_003194313.1 5335121..5336488(-) (radA) [Pseudomonas sp. MYb193]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAATG
CGGCGCGTGGAACACCCTGACTGAAACCATGATCGAGAGTGGCGGTGCCGCGGCCCCCACCGGCCGTGCCGGCTGGACTG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGCTTTTCCACCGCCTCCGGCGAATTG
GACCGGGTCTTGGGCGGTGGTCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGACCCTGGCATCGGCAAGTCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCTGCGCTGTATGTCACGGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGTGCCCGGCGCCTGGGCTTGCCCCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTCATTGACTCGATCCAGACGATTTTTACCGAACAACTGCAATCGGCACC
CGGCGGCGTGTCCCAGGTGCGCGAAAGCGCCGCGCTGTTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCACTGGCCGGGCCACGGGTGTTGGAACACATGGTCGACACCGTGTTGTATTTCGAA
GGGGAATCCGACGGTCGCCTGCGCCTGCTTCGGGCGGTGAAGAACCGCTTTGGCGCCGTCAACGAACTGGGTGTGTTCGC
CATGACCGACCGGGGGCTGAAAGAAGTCTCTAACCCCTCGGCGATTTTTCTCACCCGCGCTCAGGAAGAGGTCCCGGGCA
GTGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACTTGGCA
AACCCACGACGGGTCACATTGGGCCTGGACCAGAACCGCCTGGCGATGTTGCTGGCGGTGCTGCACCGACATGGCGGCAT
TCCGACCCACGATCAGGATGTGTTCCTTAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACTGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAACCGGCCGTTGCCCCATGACTTGCTGGTGTTTGGCGAGGTGGGGTTGTCGGGC
GAAGTGCGCCCGGTGCCGAGTGGGCAGGAGCGCTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGGGCGATTGTGCCCAA
GGGTAATGCGCCGAAGGAGGCGCCGCCGGGGTTACAGATCATTGCTGTGACGCGGCTGGAGCAGGCGTTGGATGCCCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466

Multiple sequence alignment