Detailed information NTG0245581

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CLD04_RS19530
• Genome accession: NZ_CP023257
• Coordinates: 3695939..3697084 (+)
• Length: 381 a.a.
• NCBI ID: WP_095844025.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain TLO3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3690939..3702084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLD04_RS19505 (CLD04_19505)	albF	3690955..3692235 (+)	1281	WP_095844021.1	pitrilysin family protein	-
CLD04_RS19510 (CLD04_19510)	albG	3692232..3692933 (+)	702	WP_095844022.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
CLD04_RS19515 (CLD04_19515)	ywhL	3692939..3694315 (-)	1377	WP_095844023.1	YncE family protein	-
CLD04_RS19520 (CLD04_19520)	ywhK	3694354..3695709 (-)	1356	WP_095844024.1	YncE family protein	-
CLD04_RS22430 (CLD04_19525)	-	3695706..3695936 (-)	231	WP_024572000.1	hypothetical protein	-
CLD04_RS19530 (CLD04_19530)	rapF	3695939..3697084 (+)	1146	WP_095844025.1	tetratricopeptide repeat protein	Regulator
CLD04_RS19535 (CLD04_19535)	-	3697068..3697187 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
CLD04_RS19540 (CLD04_19540)	ywhH	3697286..3697751 (+)	466	Protein_3811	YbaK/EbsC family protein	-
CLD04_RS19545 (CLD04_19545)	speB	3697783..3698655 (-)	873	WP_095844026.1	agmatinase	-
CLD04_RS19550 (CLD04_19550)	speE	3698716..3699546 (-)	831	WP_003227543.1	spermidine synthase	-
CLD04_RS19555 (CLD04_19555)	pbpG	3699749..3701824 (+)	2076	WP_095844027.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45579.21 Da
• Isoelectric Point: 5.0684

>NTDB_id=245581 CLD04_RS19530 WP_095844025.1 3695939..3697084(+) (rapF) [Bacillus subtilis strain TLO3]
MSGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=245581 CLD04_RS19530 WP_095844025.1 3695939..3697084(+) (rapF) [Bacillus subtilis strain TLO3]
GTGTCAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTAATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTTCCTTCATTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (263-290)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572