Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CLD04_RS16430 Genome accession   NZ_CP023257
Coordinates   3079040..3079684 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3074040..3084684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS16395 (CLD04_16395) mrpB 3075232..3075663 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  CLD04_RS16400 (CLD04_16400) mrpC 3075663..3076004 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  CLD04_RS16405 (CLD04_16405) mrpD 3075997..3077478 (+) 1482 WP_095843910.1 Na+/H+ antiporter subunit D -
  CLD04_RS16410 (CLD04_16410) mrpE 3077484..3077960 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  CLD04_RS16415 (CLD04_16415) mrpF 3077960..3078244 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  CLD04_RS16420 (CLD04_16420) mnhG 3078228..3078602 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  CLD04_RS16425 (CLD04_16425) yuxO 3078641..3079021 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  CLD04_RS16430 (CLD04_16430) comA 3079040..3079684 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  CLD04_RS16435 (CLD04_16435) - 3079765..3082078 (-) 2314 Protein_3192 histidine kinase -
  CLD04_RS16440 (CLD04_16440) comX 3082094..3082315 (-) 222 WP_014114983.1 competence pheromone ComX -
  CLD04_RS16445 (CLD04_16445) - 3082312..3083181 (-) 870 WP_095843911.1 polyprenyl synthetase family protein -
  CLD04_RS16450 (CLD04_16450) degQ 3083366..3083506 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  CLD04_RS22180 - 3083728..3083790 (+) 63 Protein_3196 hypothetical protein -
  CLD04_RS16455 (CLD04_16455) - 3083967..3084335 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=245570 CLD04_RS16430 WP_003220716.1 3079040..3079684(-) (comA) [Bacillus subtilis strain TLO3]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=245570 CLD04_RS16430 WP_003220716.1 3079040..3079684(-) (comA) [Bacillus subtilis strain TLO3]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment