Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CLD04_RS12750 Genome accession   NZ_CP023257
Coordinates   2389243..2390046 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2384243..2395046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS12730 (CLD04_12730) glpQB 2385380..2386111 (-) 732 WP_095843827.1 glycerophosphodiester phosphodiesterase -
  CLD04_RS12735 (CLD04_12735) yqiI 2386190..2386810 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  CLD04_RS12740 (CLD04_12740) - 2386830..2387126 (-) 297 WP_014480225.1 hypothetical protein -
  CLD04_RS21655 - 2387434..2387586 (+) 153 WP_128474049.1 hypothetical protein -
  CLD04_RS12745 (CLD04_12745) yqiG 2387659..2388777 (+) 1119 WP_095843828.1 NADH-dependent flavin oxidoreductase -
  CLD04_RS12750 (CLD04_12750) spo0A 2389243..2390046 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  CLD04_RS12755 (CLD04_12755) spoIVB 2390317..2391597 (-) 1281 WP_095843829.1 SpoIVB peptidase -
  CLD04_RS12760 (CLD04_12760) recN 2391772..2393502 (-) 1731 WP_095843830.1 DNA repair protein RecN Machinery gene
  CLD04_RS12765 (CLD04_12765) argR 2393539..2393988 (-) 450 WP_003230265.1 arginine repressor ArgR -
  CLD04_RS12770 (CLD04_12770) yqxC 2394086..2394931 (-) 846 WP_031600677.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=245546 CLD04_RS12750 WP_003226427.1 2389243..2390046(-) (spo0A) [Bacillus subtilis strain TLO3]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=245546 CLD04_RS12750 WP_003226427.1 2389243..2390046(-) (spo0A) [Bacillus subtilis strain TLO3]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTACTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment