Detailed information
Bioinformatically predicted
Overview
| Name | rapC | Type | Regulator |
| Locus tag | CLD04_RS10925 | Genome accession | NZ_CP023257 |
| Coordinates | 2071297..2072418 (+) | Length | 373 a.a. |
| NCBI ID | WP_095843761.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain TLO3 | ||
| Function | inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2063488..2100153 | 2071297..2072418 | within | 0 |
Gene organization within MGE regions
Location: 2063488..2100153
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLD04_RS10845 (CLD04_10845) | - | 2063488..2063800 (+) | 313 | Protein_2097 | helix-turn-helix transcriptional regulator | - |
| CLD04_RS10850 (CLD04_10850) | - | 2063850..2065448 (-) | 1599 | WP_095843755.1 | hypothetical protein | - |
| CLD04_RS10855 (CLD04_10855) | - | 2065554..2066063 (-) | 510 | WP_095843756.1 | MepB family protein | - |
| CLD04_RS10860 (CLD04_10860) | - | 2066170..2066538 (-) | 369 | WP_095843757.1 | hypothetical protein | - |
| CLD04_RS10875 (CLD04_10875) | - | 2067063..2067764 (-) | 702 | WP_095843758.1 | hypothetical protein | - |
| CLD04_RS22115 (CLD04_10885) | - | 2068410..2068535 (+) | 126 | Protein_2102 | hypothetical protein | - |
| CLD04_RS22400 | - | 2068632..2068772 (-) | 141 | WP_350308366.1 | IS3 family transposase | - |
| CLD04_RS10890 (CLD04_10890) | - | 2068759..2069115 (-) | 357 | WP_157762005.1 | DDE-type integrase/transposase/recombinase | - |
| CLD04_RS22405 | - | 2069078..2069548 (-) | 471 | WP_350308374.1 | IS3 family transposase | - |
| CLD04_RS10900 (CLD04_10900) | - | 2069545..2069862 (-) | 318 | WP_014479904.1 | transposase | - |
| CLD04_RS10905 (CLD04_10905) | - | 2069944..2070186 (+) | 243 | Protein_2107 | hypothetical protein | - |
| CLD04_RS10915 (CLD04_10915) | - | 2070367..2070642 (+) | 276 | Protein_2108 | SOS response-associated peptidase family protein | - |
| CLD04_RS22410 (CLD04_10920) | - | 2071017..2071163 (+) | 147 | Protein_2109 | phage holin | - |
| CLD04_RS10925 (CLD04_10925) | rapC | 2071297..2072418 (+) | 1122 | WP_095843761.1 | tetratricopeptide repeat protein | Regulator |
| CLD04_RS10935 (CLD04_10935) | - | 2073207..2073524 (+) | 318 | WP_014479904.1 | transposase | - |
| CLD04_RS10940 (CLD04_10940) | - | 2073536..2074435 (+) | 900 | WP_026113687.1 | IS3 family transposase | - |
| CLD04_RS22125 | - | 2074548..2075027 (-) | 480 | WP_250614804.1 | DNA polymerase | - |
| CLD04_RS22130 | - | 2075044..2075373 (-) | 330 | WP_250614805.1 | hypothetical protein | - |
| CLD04_RS22135 | - | 2075429..2075785 (-) | 357 | WP_306816895.1 | hypothetical protein | - |
| CLD04_RS10950 (CLD04_10950) | - | 2075778..2076073 (-) | 296 | Protein_2116 | YolD-like family protein | - |
| CLD04_RS21820 (CLD04_10955) | - | 2076234..2076525 (+) | 292 | Protein_2117 | hypothetical protein | - |
| CLD04_RS10960 (CLD04_10960) | - | 2076565..2076924 (-) | 360 | WP_043857661.1 | hypothetical protein | - |
| CLD04_RS21625 | - | 2077184..2077267 (+) | 84 | WP_134819451.1 | putative holin-like toxin | - |
| CLD04_RS10965 (CLD04_10965) | yokL | 2077556..2078089 (-) | 534 | WP_014479996.1 | GNAT family protein | - |
| CLD04_RS10970 (CLD04_10970) | yokK | 2078149..2078703 (-) | 555 | WP_014479997.1 | SMI1/KNR4 family protein | - |
| CLD04_RS10975 (CLD04_10975) | - | 2078759..2079217 (-) | 459 | WP_014479998.1 | YrhA family protein | - |
| CLD04_RS10980 (CLD04_10980) | - | 2079230..2081116 (-) | 1887 | WP_095843762.1 | T7SS effector LXG polymorphic toxin | - |
| CLD04_RS10985 (CLD04_10985) | yobM | 2081216..2081773 (-) | 558 | WP_141556159.1 | SMI1/KNR4 family protein | - |
| CLD04_RS10990 (CLD04_10990) | aoxN | 2081901..2083322 (+) | 1422 | WP_141556158.1 | flavin monoamine oxidase family protein | - |
| CLD04_RS10995 (CLD04_10995) | csaA | 2083570..2083902 (-) | 333 | WP_085187532.1 | chaperone CsaA | - |
| CLD04_RS11000 (CLD04_11000) | yobQ | 2083967..2084692 (-) | 726 | WP_095843764.1 | helix-turn-helix domain-containing protein | - |
| CLD04_RS11005 (CLD04_11005) | yobR | 2084707..2085450 (-) | 744 | WP_041336305.1 | GNAT family N-acetyltransferase | - |
| CLD04_RS11010 (CLD04_11010) | yobS | 2085528..2086103 (-) | 576 | WP_095843765.1 | TetR/AcrR family transcriptional regulator | - |
| CLD04_RS11015 (CLD04_11015) | yobT | 2086110..2086811 (-) | 702 | WP_017697554.1 | MBL fold metallo-hydrolase | - |
| CLD04_RS11020 (CLD04_11020) | yobU | 2086889..2087371 (-) | 483 | WP_014480008.1 | GyrI-like domain-containing protein | - |
| CLD04_RS11025 (CLD04_11025) | yobV | 2087425..2088366 (-) | 942 | WP_095843766.1 | YafY family protein | - |
| CLD04_RS11030 (CLD04_11030) | csk22 | 2088572..2089117 (+) | 546 | WP_095843767.1 | mother cell-specific sporulation protein Csk22 | - |
| CLD04_RS11035 (CLD04_11035) | czrA | 2089144..2089467 (-) | 324 | WP_003231284.1 | Zn(II)-responsive metalloregulatory transcriptional repressor CzrA | - |
| CLD04_RS11040 (CLD04_11040) | yocA | 2089661..2090338 (+) | 678 | WP_003231283.1 | lysozyme family protein | - |
| CLD04_RS11045 (CLD04_11045) | ctaM | 2090428..2090964 (-) | 537 | WP_003231280.1 | DUF420 domain-containing protein | - |
| CLD04_RS11050 (CLD04_11050) | yocB | 2091101..2091883 (-) | 783 | WP_095843768.1 | VLRF1 family aeRF1-type release factor | - |
| CLD04_RS11055 (CLD04_11055) | - | 2092054..2092551 (+) | 498 | WP_095843769.1 | hypothetical protein | - |
| CLD04_RS11060 (CLD04_11060) | yocD | 2092615..2093592 (+) | 978 | WP_041351143.1 | LD-carboxypeptidase | - |
| CLD04_RS11065 (CLD04_11065) | desE | 2093754..2094812 (+) | 1059 | WP_041351144.1 | fatty acid desaturase DesE | - |
| CLD04_RS11070 (CLD04_11070) | desK | 2094932..2096044 (+) | 1113 | WP_015251908.1 | two-component sensor histidine kinase DesK | - |
| CLD04_RS11075 (CLD04_11075) | desR | 2096063..2096662 (+) | 600 | WP_004399356.1 | two-component system response regulator DesR | - |
| CLD04_RS11080 (CLD04_11080) | walN | 2097267..2098130 (-) | 864 | WP_003231267.1 | 3D domain-containing protein | - |
| CLD04_RS11085 (CLD04_11085) | recQ | 2098378..2100153 (-) | 1776 | WP_095843770.1 | DNA helicase RecQ | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 43944.69 Da Isoelectric Point: 6.0765
>NTDB_id=245544 CLD04_RS10925 WP_095843761.1 2071297..2072418(+) (rapC) [Bacillus subtilis strain TLO3]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIASIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECL
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIASIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECL
Nucleotide
Download Length: 1122 bp
>NTDB_id=245544 CLD04_RS10925 WP_095843761.1 2071297..2072418(+) (rapC) [Bacillus subtilis strain TLO3]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGCCTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
AA
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGCCTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
AA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rapC | Bacillus subtilis subsp. subtilis str. 168 |
50.402 |
100 |
0.504 |
| rapF | Bacillus subtilis subsp. subtilis str. 168 |
44.681 |
100 |
0.45 |