Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CLD04_RS08350 Genome accession   NZ_CP023257
Coordinates   1556361..1556936 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain TLO3     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1552608..1558208 1556361..1556936 within 0


Gene organization within MGE regions


Location: 1552608..1558208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS08330 (CLD04_08330) - 1552608..1553759 (+) 1152 Protein_1589 IS3 family transposase -
  CLD04_RS08335 (CLD04_08335) mscT 1553821..1554624 (-) 804 WP_017697281.1 small-conductance mechanosensitive channel protein MscT -
  CLD04_RS08340 (CLD04_08340) ahpA 1554861..1555403 (+) 543 WP_017697282.1 biofilm-specific peroxidase AhpA -
  CLD04_RS08345 (CLD04_08345) ykuV 1555475..1555921 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  CLD04_RS08350 (CLD04_08350) rok 1556361..1556936 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  CLD04_RS08355 (CLD04_08355) - 1557057..1558208 (+) 1152 Protein_1594 IS3 family transposase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=245538 CLD04_RS08350 WP_003232378.1 1556361..1556936(+) (rok) [Bacillus subtilis strain TLO3]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=245538 CLD04_RS08350 WP_003232378.1 1556361..1556936(+) (rok) [Bacillus subtilis strain TLO3]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTCCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment