Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CLD04_RS08245 Genome accession   NZ_CP023257
Coordinates   1539217..1539681 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain TLO3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534217..1544681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS08225 (CLD04_08225) kinA 1534684..1536504 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  CLD04_RS08230 (CLD04_08230) dapX 1536514..1537695 (-) 1182 WP_017697268.1 aminotransferase A -
  CLD04_RS08235 (CLD04_08235) - 1537897..1538058 (-) 162 WP_003245246.1 hypothetical protein -
  CLD04_RS08240 (CLD04_08240) cheV 1538262..1539173 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  CLD04_RS08245 (CLD04_08245) kre 1539217..1539681 (-) 465 WP_003232406.1 YkyB family protein Regulator
  CLD04_RS08250 (CLD04_08250) ykuC 1539807..1541099 (-) 1293 WP_017697269.1 MFS transporter -
  CLD04_RS08255 (CLD04_08255) ltdD 1541175..1541669 (-) 495 WP_072557193.1 L,D-transpeptidase family protein -
  CLD04_RS08260 (CLD04_08260) ppeE 1541726..1542586 (-) 861 WP_017697271.1 metallophosphoesterase -
  CLD04_RS08265 (CLD04_08265) fadH 1542729..1543493 (+) 765 WP_017697272.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=245537 CLD04_RS08245 WP_003232406.1 1539217..1539681(-) (kre) [Bacillus subtilis strain TLO3]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=245537 CLD04_RS08245 WP_003232406.1 1539217..1539681(-) (kre) [Bacillus subtilis strain TLO3]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAACCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment