Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CLD04_RS06080 Genome accession   NZ_CP023257
Coordinates   1148469..1149047 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain TLO3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143469..1154047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS06060 (CLD04_06060) hemAT 1143984..1145282 (-) 1299 WP_041338163.1 heme-based aerotactic transducer HemAT -
  CLD04_RS06065 (CLD04_06065) comW 1145421..1146954 (-) 1534 Protein_1130 FAD-dependent oxidoreductase -
  CLD04_RS06070 (CLD04_06070) yhxC 1147058..1147915 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  CLD04_RS06075 (CLD04_06075) yhzC 1147943..1148176 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  CLD04_RS06080 (CLD04_06080) comK 1148469..1149047 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  CLD04_RS06085 (CLD04_06085) yhxD 1149092..1149991 (-) 900 WP_017695343.1 SDR family oxidoreductase -
  CLD04_RS06090 (CLD04_06090) yhjA 1150208..1150477 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  CLD04_RS06095 (CLD04_06095) yhjB 1150521..1151990 (-) 1470 WP_017695341.1 sodium:solute symporter -
  CLD04_RS06100 (CLD04_06100) yhjC 1151987..1152187 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  CLD04_RS06105 (CLD04_06105) - 1152386..1152757 (-) 372 WP_014476361.1 hypothetical protein -
  CLD04_RS06110 (CLD04_06110) yhjE 1152909..1153532 (+) 624 WP_010886465.1 VTT domain-containing protein -
  CLD04_RS06115 (CLD04_06115) lepB 1153534..1154040 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=245525 CLD04_RS06080 WP_003245329.1 1148469..1149047(+) (comK) [Bacillus subtilis strain TLO3]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=245525 CLD04_RS06080 WP_003245329.1 1148469..1149047(+) (comK) [Bacillus subtilis strain TLO3]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment